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Submissions from 2009

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The Gene Ontology's Reference Genome Project: a unified framework for functional annotation across species.

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Encephalitogenic T cells that stably express both T-bet and ROR gamma t consistently produce IFNgamma but have a spectrum of IL-17 profiles., Leeman S. Abromson, R T. Bronson, and M E. Dorf

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An ENU-induced mutation in mouse glycyl-tRNA synthetase (GARS) causes peripheral sensory and motor phenotypes creating a model of Charcot-Marie-Tooth type 2D peripheral neuropathy., F Achilli, Facer V. Bros, H P. Williams, G T. Banks, C D. Nickols, K L. Seburn, R Kendall, R W. Burgess, and al et

The future of mouse genetics in osteoporosis research., Cheryl Ackert-Bicknell

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Strain-specific effects of rosiglitazone on bone mass, body composition, and serum insulin-like growth factor-I., Cheryl L. Ackert-Bicknell, K R. Shockley, L G. Horton, B Lecka-Czernik, G A. Churchill, and C J. Rosen

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Foreword for special issue: mouse models for hearing research., K N. Alagramam, S D. Brown, R R. Davis, K R. Johnson, S M. Jones, J B. Macauley, Q Y. Zheng, and J Zuo

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Neuroendocrine inhibition of glucose production and resistance to cancer in dwarf mice., J M. Alderman, K Flurkey, N L. Brooks, S B. Naik, R Bronson, S Klebanov, C E. Parker, D E. Harrison, and al Et

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Zebrafish Hagoromo mutants up-regulate fgf8 postembryonically and develop neuroblastoma., A Amsterdam, K Lai, A Z. Komisarczuk, T S. Becker, R T. Bronson, N Hopkins, and J A. Lees

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Noonan syndrome cardiac defects are caused by PTPN11 acting in endocardium to enhance endocardial-mesenchymal transformation., T Araki, G Chan, S Newbigging, L Morikawa, R T. Bronson, and B G. Neel

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TGF-beta signaling proteins and the Protein Ontology., C N. Arighi, H Liu, D A. Natale, W C. Barker, H Drabkin, J A. Blake, B Smith, and C H. Wu

Light-induced dark states of organic fluochromes enable 30 nm resolution imaging in standard media., D Baddeley, I D. Jayasinghe, C Cremer, M B. Cannell, and C Soeller

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Ontological Discovery Environment: a system for integrating gene-phenotype associations., E J. Baker, J J. Jay, V M. Philip, Y Zhang, Z Li, R Kirova, M A. Langston, and E J. Chesler

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B Cell IgD Deletion Prevents Alveolar Bone Loss Following Murine Oral Infection., P J. Baker, N R. Boutaugh, M Tiffany, and D C. Roopenian

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Immunofluorescence imaging of DNA damage response proteins: optimizing protocols for super-resolution microscopy., B T. Bennett, J Bewersdorf, and K L. Knight

Human nasal polyp microenvironments maintained in a viable and functional state as xenografts in NOD-scid IL2rgamma(null) mice., J M. Bernstein, S P. Brooks, H K. Lehman, L Pope, A Sands, L D. Shultz, and R B. Bankert

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The Mouse Genome Database genotypes::phenotypes., J A. Blake, C J. Bult, J T. Eppig, J A. Kadin, and J E. Richardson

Extracellular matrix molecules in neuromuscular junctions and central nervous system synapses., L Burgess R. Bogdanik

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Comparison of threshold selection methods for microarray gene co-expression matrices., B R. Borate, E J. Chesler, M A. Langston, A M. Saxton, and B H. Voy

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Increased bone marrow fat in anorexia nervosa., M A. Bredella, P K. Fazeli, K K. Miller, M Misra, M Torriani, B J. Thomas, R H. Ghomi, C J. Rosen, and A Klibanski

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Genetic factors contributing to obesity and body weight can act through mechanisms affecting muscle weight, fat weight, or both., G A. Brockmann, S W. Tsaih, C Neuschl, G A. Churchill, and R Li

Pathologic phenotyping of mutant mice., R T. Bronson

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Mouse models of diabetic nephropathy., F C. Brosius, C E. Alpers, E P. Bottinger, M D. Breyer, T M. Coffman, S B. Gurley, R C. Harris, M Kakoki, M Kretzler, E H. Leiter, and al et

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A critical role for IL-21 receptor signaling in the pathogenesis of systemic lupus erythematosus in BXSB-Yaa mice., J A. Bubier, T J. Sproule, O Foreman, R Spolski, D J. Shaffer, H C. Morse, W J. Leonard, and D C. Roopenian

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An experimental assessment of in silico haplotype association mapping in laboratory mice., Herbert S. Burgess, S W. Tsaih, I M. Stylianou, K Walsh, A J. Cox, and B Paigen

Surgical oocyte retrieval (SOR): a method for collecting mature mouse oocytes without euthanasia., S L. Byers, M V. Wiles, and R A. Taft

Mechanical stimulation of mesenchymal stem cell proliferation and differentiation promotes osteogenesis while preventing dietary-induced obesity., E Capilla, C J. Rosen, V Gilsanz, J E. Pessin, S Judex, and C T. Rubin

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Functional coding variation in recombinant inbred mouse lines reveals multiple serotonin transporter-associated phenotypes., A M. Carneiro, D C. Airey, B Thompson, C B. Zhu, L Lu, E J. Chesler, K M. Erikson, and R D. Blakely

Maximal extraction of biological information from genetic interaction data., G W. Carter, D J. Galas, and T Galitski

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A homologous genetic basis of the murine cpfl1 mutant and human achromatopsia linked to mutations in the PDE6C gene., B Chang, T Grau, S Dangel, R Hurd, B Jurklies, B Baumann, S Bolz, N Artemyev, S Kohl, J Heckenlively, and B Wissinger

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Dysferlin deficiency and the development of cardiomyopathy in a mouse model of limb-girdle muscular dystrophy 2B., T H. Chase, G A. Cox, L Burzenski, O Foreman, and L D. Shultz

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IGF-1:tetanus toxin fragment C fusion protein improves delivery of IGF-1 to spinal cord but fails to prolong survival of ALS mice., R J. Chian, J Li, I Ay, S A. Celia, B B. Kashi, E Tamrazian, J C. Matthews, R T. Bronson, A Rossomando, R B. Pepinsky, P S. Fishman, R H. Brown, and J W. Francis

Failure of alpha-galactosylceramide to prevent diabetes in virus-inducible models of type 1 diabetes in the rat., P Chopra, P Diiorio, S C. Pino, S B. Wilson, N E. Phillips, J P. Mordes, A A. Rossini, D L. Greiner, L D. Shultz, and R Bortell

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Lineage-specific biology revealed by a finished genome assembly of the mouse., D M. Church, L Goodstadt, L W. Hillier, M C. Zody, S Goldstein, X She, and C J. Bult

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The caBIG terminology review process., J J. Cimino, T F. Hayamizu, O Bodenreider, B Davis, G A. Stafford, and M Ringwald

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The deacetylase HDAC4 controls myocyte enhancing factor-2-dependent structural gene expression in response to neural activity., T J. Cohen, T Barrientos, Z C. Hartman, S M. Garvey, G A. Cox, and T P. Yao

Validation of a noninvasive dynamic spinal stiffness assessment methodology in an animal model of intervertebral disc degeneration., C J. Colloca, T S. Keller, R J. Moore, D E. Harrison, and R Gunzburg

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A mouse model for Meckel syndrome type 3., S A. Cook, G B. Collin, R T. Bronson, J K. Naggert, D P. Liu, E C. Akeson, and M T. Davisson

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A new standard genetic map for the laboratory mouse., A Cox, Bicknell C. Ackert, B L. Dumont, Y Ding, J T. Bell, G A. Brockmann, J E. Wergedal, C Bult, B Paigen, J Flint, S W. Tsaih, G A. Churchill, and K W. Broman

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TRBP control of PACT-induced phosphorylation of protein kinase R is reversed by stress., A Daher, G Laraki, M Singh, Pena C. Melendez, S Bannwarth, A H. Peters, E F. Meurs, R E. Braun, R C. Patel, and A Gatignol

Animal models of diabetic uropathy., F Daneshgari, E H. Leiter, G Liu, and J Reeder

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Mutation discovery in the mouse using genetically guided array capture and resequencing., M D'Ascenzo, C Meacham, J Kitzman, T J. Albert, A Czechanski, L R. Donahue, J Affourtit, J A. Jeddeloh, L Reinholdt, and al et

Gender- and compartment-specific bone loss in C57BL/6J mice: correlation to season?, K M. Delahunty, L G. Horton, H F. Coombs, K L. Shultz, K L. Svenson, M A. Marion, M F. Holick, W G. Beamer, and C J. Rosen

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Functional interchangeability of rod and cone transducin alpha-subunits., W T. Deng, K Sakurai, J Liu, A Dinculescu, J Li, J Pang, S H. Min, V A. Chiodo, S L. Boye, B Chang, V J. Kefalov, and W W. Hauswirth

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Biochemical and genetic evidence for a role of IGHMBP2 in the translational machinery., Saquer M. de Planell, D G. Schroeder, M C. Rodicio, G A. Cox, and Z Mourelatos

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Development of immunoglobulin lambda-chain-positive B cells, but not editing of immunoglobulin kappa-chain, depends on NF-kappaB signals., E Derudder, E J. Cadera, J C. Vahl, J Wang, C J. Fox, S Zha, Loo G. van, M Pasparakis, M S. Schlissel, Supprian M. Schmidt, and K Rajewsky

Hematopoietic cell types: Prototype for a revised cell ontology., A D. Diehl, A D. Augustine, J A. Blake, L G. Cowell, E S. Gold, Lewis T. Gondre, A M. Masci, T F. Meehan, P A. Morel, A Nijnik, and al et

Using ontology visualization to facilitate access to knowledge about human disease genes., M E Blake Dolan

Integrating text mining into the MGI biocuration workflow., K G. Dowell, Hill M. McAndrews, D P. Hill, H J. Drabkin, and J A. Blake

Integrating text mining into the MGI biocuration workflow., K G. Dowell, Hill M. McAndrews, D P. Hill, H J. Drabkin, and J A. Blake

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New Zealand Ginger mouse: novel model that associates the tyrp1b pigmentation gene locus with regulation of lean body mass., C E. Duchesnes, J K. Naggert, M A. Tatnell, N Beckman, R N. Marnane, J A. Rodrigues, A Halim, B Pontre, A W. Stewart, G L. Wolff, R Elliott, and K G. Mountjoy

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Transforming growth factor-beta1 impairs neuropathic pain through pleiotropic effects., S Echeverry, X Q. Shi, A Haw, H Liu, Z W. Zhang, and J Zhang

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Creating a mouse academic research commons., David Einhorn and Rita Heimes

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Effect of in vitro maturation of mouse oocytes on the health and lifespan of adult offspring., J J. Eppig, M J. O'Brien, K Wigglesworth, A Nicholson, W Zhang, and B A. King

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MouseCyc: a curated biochemical pathways database for the laboratory mouse., A V. Evsikov, M E. Dolan, M P. Genrich, E Patek, and C J. Bult

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Evolutionary origin and phylogenetic analysis of the novel oocyte-specific eukaryotic translation initiation factor 4E in Tetrapoda., A V. Evsikov and de Evsikova Marin

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Gene expression during the oocyte-to-embryo transition in mammals., A V. Evsikov and de Evsikova Marin

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Differential induction of apoptosis in HER2 and EGFR addicted cancers following PI3K inhibition., A C. Faber, D Li, Y Song, M C. Liang, B Y. Yeap, R T. Bronson, E Lifshits, Z Chen, S M. Maira, Echeverria C. Garcia, K K. Wong, and J A. Engelman

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A homozygous frameshift mutation in the mouse Flg gene facilitates enhanced percutaneous allergen priming., P G. Fallon, T Sasaki, A Sandilands, J P. Sundberg, R B. Presland, P Fleckman, N Shimizu, J Kudoh, A D. Irvine, and al et

Genetic analysis of blood pressure in 8 mouse intercross populations., M Feng, M E. Deerhake, R Keating, J Thaisz, L Xu, S W. Tsaih, R Smith, T Ishige, F Sugiyama, G A. Churchill, and K DiPetrillo

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SRp38 regulates alternative splicing and is required for Ca(2+) handling in the embryonic heart., Y Feng, M T. Valley, J Lazar, A L. Yang, R T. Bronson, S Firestein, W A. Coetzee, and J L. Manley

Epilepsy genes that do not encode ion channels., W N. Frankel

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Genetics of complex neurological disease: challenges and opportunities for modeling epilepsy in mice and rats., W N. Frankel

Human epilepsy as a complex genetic trait: lessons from animal models and prospects for the future., W N. Frankel

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Szt2, a novel gene for seizure threshold in mice., W N. Frankel, Y Yang, C L. Mahaffey, B J. Beyer, and T P. O'Brien

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DSCAM and DSCAML1 function in self-avoidance in multiple cell types in the developing mouse retina., P G. Fuerst, F Bruce, M Tian, W Wei, J Elstrott, M B. Feller, L Erskine, J H. Singer, and R W. Burgess

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Adhesion molecules in establishing retinal circuitry., P G. Fuerst and R W. Burgess

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A missense mutation in the Capza3 gene and disruption of F-actin organization in spermatids of repro32 infertile male mice., C B. Geyer, A L. Inselman, J A. Sunman, S Bornstein, M A. Handel, and E M. Eddy

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Hair interior defect in AKR/J mice., K A. Giehl, C S. Potter, B Wu, K A. Silva, L B. Rowe, A Awgulewitsch, and J P. Sundberg

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Rab3 dynamically controls protein composition at active zones., E R. Graf, R W. Daniels, R W. Burgess, T L. Schwarz, and A DiAntonio

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The aqueous humor outflow pathway of zebrafish., M P. Gray, R S. Smith, K A. Soules, S W. John, and B A. Link

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Mouse phenome database., S C. Grubb, T P. Maddatu, Carol J. Bult, and M A. Bogue

Dual color localization microscopy of cellular nanostructures., M Gunkel, F Erdel, K Rippe, P Lemmer, R Kaufmann, C Hormann, R Amberger, and C Cremer

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Nr2e3-directed transcriptional regulation of genes involved in photoreceptor development and cell-type specific phototransduction., N B. Haider, N Mollema, M Gaule, Y Yuan, A J. Sachs, A M. Nystuen, J K. Naggert, and P M. Nishina

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Otitis media in a mouse model for Down syndrome., F Han, H Yu, J Zhang, C Tian, C Schmidt, C Nava, M T. Davisson, and Q Y. Zheng

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Millisecond-timescale optical control of neural dynamics in the nonhuman primate brain., X Han, X Qian, J G. Bernstein, H H. Zhou, G T. Franzesi, P Stern, R T. Bronson, A M. Graybiel, R Desimone, and E S. Boyden

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Mouse population-guided resequencing reveals that variants in CD44 contribute to acetaminophen-induced liver injury in humans., A H. Harrill, P B. Watkins, S Su, I M. Stylianou, G A. Boorman, R S. Sackler, S C. Harris, P C. Smith, R Tennant, M Bogue, K Paigen, and al et

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Rapamycin fed late in life extends lifespan in genetically heterogeneous mice., D E. Harrison, R Strong, Z D. Sharp, J F. Nelson, C M. Astle, K Flurkey, N L. Nadon, M A. Javors, E Fernandez, and al et

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Matrix metalloproteinase 9 plays a key role in lyme arthritis but not in dissemination of Borrelia burgdorferi., A J. Heilpern, W Wertheim, J He, G Perides, R T. Bronson, and L T. Hu

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Computationally driven, quantitative experiments discover genes required for mitochondrial biogenesis., D C. Hess, C L. Myers, C Huttenhower, M A. Hibbs, A P. Hayes, J Paw, C Nislow, G Giaever, M Costanzo, O G. Troyanskaya, and al et

Ultrahigh resolution imaging of biomolecules by fluorescence photoactivation localization microscopy., S T. Hess, T J. Gould, M Gunewardene, J Bewersdorf, and M D. Mason

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Directing experimental biology: a case study in mitochondrial biogenesis., M A. Hibbs, C L. Myers, C Huttenhower, D C. Hess, K Li, A A. Caudy, and O G. Troyanskaya

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Exploring the human genome with functional maps., C Huttenhower, E M. Haley, M A. Hibbs, V Dumeaux, D R. Barrett, H A. Coller, and O G. Troyanskaya

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The impact of incomplete knowledge on evaluation: an experimental benchmark for protein function prediction., C Huttenhower, M A. Hibbs, C L. Myers, A A. Caudy, D C. Hess, and O G. Troyanskaya

Computational analysis of the yeast proteome: understanding and exploiting functional specificity in genomic data., C Huttenhower, C L. Myers, M A. Hibbs, and O G. Troyanskaya

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Dengue virus infection and virus-specific HLA-A2 restricted immune responses in humanized NOD-scid IL2rgammanull mice., S Jaiswal, T Pearson, H Friberg, L D. Shultz, D L. Greiner, A L. Rothman, and A Mathew

Improved murine model of malaria using Plasmodium falciparum competent strains and non-myelodepleted NOD-scid IL2Rgammanull mice engrafted with human erythrocytes., Diaz M. Jimenez, T Mulet, S Viera, V Gomez, H Garuti, J Ibanez, Doval A. Alvarez, L D. Shultz, A Martinez, Viola D. Gargallo, and Barturen I. Angulo

Macaca fascicularis papillomavirus type 1: a non-human primate betapapillomavirus causing rapidly progressive hand and foot papillomatosis., J Joh, K Hopper, Doorslaer K. Van, J P. Sundberg, A B. Jenson, and S J. Ghim

Automated annotation-based bio-ontology alignment with structural validation., C A. Joslyn, B Baddeley, C Bult, R Riensche, K Rodland, A Sanfilippo, A White, M E. Dolan, and J A. Blake

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Amino acid polymorphisms altering the glycosylation of IL-2 do not protect from type 1 diabetes in the NOD mouse., M Kamanaka, D Rainbow, Gossler K. Schuster, E E. Eynon, A V. Chervonsky, L S. Wicker, and R A. Flavell

Fat targets for skeletal health., M Kawai, M J. Devlin, and C J. Rosen

Insulin-like growth factor-I and bone: lessons from mice and men., M Kawai and C J. Rosen

Kinetics of transmission, infectivity, and genome stability of two novel mouse norovirus isolates in breeding mice., J A. Kelmenson, D P. Pomerleau, S Griffey, W Zhang, M J. Karolak, and J R. Fahey

Cytoscape: a community-based framework for network modeling., S Killcoyne, G W. Carter, J Smith, and J Boyle

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Human peripheral blood leucocyte non-obese diabetic-severe combined immunodeficiency interleukin-2 receptor gamma chain gene mouse model of xenogeneic graft-versus-host-like disease and the role of host major histocompatibility complex., M A. King, L Covassin, M A. Brehm, L Burzenski, T H. Chase, B Gott, A A. Rossini, L D. Shultz, D L. Greiner, and al et

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O6-methylguanine-induced cell death involves exonuclease 1 as well as DNA mismatch recognition in vivo., J Klapacz, L B. Meira, D G. Luchetti, J A. Calvo, R T. Bronson, W Edelmann, and L D. Samson

Questioning the accuracy of a recent review of osteoporosis medications., L N. Kuhl, B Ettinger, C J. Rosen, and N F. Col

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The emergence of 'The HUGO Journal'., Dhavendra Kumar and Edison T Liu

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Genetic mechanisms in Apc-mediated mammary tumorigenesis., M Kuraguchi, Baah N. Ohene, D Sonkin, R T. Bronson, and R Kucherlapati

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Many ribosomal protein mutations are associated with growth impairment and tumor predisposition in zebrafish., K Lai, A Amsterdam, S Farrington, R T. Bronson, N Hopkins, and J A. Lees

Isolation and short-term culture of mouse spermatocytes for analysis of meiosis., Sophie La Salle, Fengyun Sun, and Mary Ann Handel