Title

PACdb: PolyA Cleavage Site and 3'-UTR Database.

Document Type

Article

Publication Date

2005

Keywords

Binding-Sites, Computational-Biology, DNA-Complementary, Database-Management-Systems, Databases-Genetic, Expressed-Sequence-Tags, Genome, Humans, Information-Storage-and-Retrieval, Internet

JAX Source

Bioinformatics 2005 Sep; 21(18):3691-3.

Abstract

SUMMARY: The PolyA Cleavage Site and 3'-UTR Database (PACdb) is a web-accessible database that catalogs putative 3'-processing sites and 3'-UTR sequences for multiple organisms. Sites have been identified primarily via expressed sequence tag-genome alignments, enabling delineation of both the specificities and heterogeneity of 3'-processing events. AVAILABILITY: By web browser or CGI: PACdb: http://harlequin.jax.org/pacdb/; AtPACdb: http://harlequin.jax.org/atpacdb/. SUPPLEMENTARY INFORMATION: Available online at http://harlequin.jax.org/pacdb/supplemental.php.