CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens.

Preeti Bais, The Jackson Laboratory
Sandeep Namburi, The Jackson Laboratory
Daniel M. Gatti, The Jackson Laboratory
Xinyu Zhang
Jeffrey Chuang, The Jackson Laboratory

Abstract

Availability: The CWL implementation is at: https://github.com/TheJacksonLaboratory/CloudNeo . For users who have obtained licenses for all internal software, integrated versions in CWL and on the Seven Bridges Cancer Genomics Cloud platform ( htps://cgc.sbgenomics.com/ , recommended version) can be obtained by contacting the authors.

Contact: jeff.chuang@jax.org.