Genetic mapping in Diversity Outbred mice identifies a Trpa1 variant influencing late-phase formalin response.

Jill M. Recla, The Jackson Laboratory
Jason A. Bubier, The Jackson Laboratory
Daniel M Gatti
Jennifer L Ryan, The Jackson Laboratory
Katie H Long
Ray F. Robledo, The Jackson Laboratory
Nicole C Glidden
Guoqiang Hou
Gary Churchill, The Jackson Laboratory
Richard S. Maser, The Jackson Laboratory
Zhong-Wei Zhang, The Jackson Laboratory
Erin E Young
Elissa J Chesler, The Jackson Laboratory
Carol J Bult, The Jackson Laboratory

We gratefully acknowledge The Jackson Laboratory (JAX) Scientific Services supported by NIH P30 CA034196, as well as the technical efforts of Andrew Garrett and Robert Burgess (JAX) for their work on HEK cell transfections.


Identification of genetic variants that influence susceptibility to pain is key to identifying molecular mechanisms and targets for effective and safe therapeutic alternatives to opioids. To identify genes and variants associated with persistent pain, we measured late phase response to formalin injection in 275 male and female Diversity Outbred (DO) mice genotyped for over 70 thousand SNPs. One quantitative trait locus (QTL) reached genome-wide significance on chromosome 1 with a support interval of 3.1 Mb. This locus, Nociq4 (nociceptive sensitivity QTL 4; MGI:5661503), harbors the well-known pain gene Trpa1 (transient receptor potential cation channel, subfamily A, member 1). Trpa1 is a cation channel known to play an important role in acute and chronic pain in both humans and mice. Analysis of DO founder strain allele effects revealed a significant effect of the CAST/EiJ allele at Trpa1, with CAST/EiJ carrier mice showing an early, but not late, response to formalin relative to carriers of the seven other inbred founder alleles (A/J, C57BL/6J, 129S1/SvImJ, NOD/ShiLtJ, NZO/HlLtJ, PWK/PhJ, and WSB/EiJ). We characterized possible functional consequences of sequence variants in Trpa1 by assessing channel conductance, TRPA1-TRPV1 interactions, and isoform expression. The phenotypic differences observed in CAST/EiJ relative to C57BL/6J carriers were best explained by Trpa1 isoform expression differences, implicating a splice junction variant as the causal functional variant. This study demonstrates the utility of advanced, high-precision genetic mapping populations in resolving specific molecular mechanisms of variation in pain sensitivity.