Submissions from 2025
An international perspective on the future of systemic sclerosis research., David J Abraham, Carol M Black, Christopher P Denton, Jörg H W Distler, Robyn Domsic, Carol Feghali-Bostwick, Pravitt Gourh, Monique Hinchcliff, Fred Kolling, Masataka Kuwana, Robert Lafyatis, Ulf Landegren, J Matthew Mahoney, Javier Martin, Marco Matucci-Cerinic, Zsuzsanna H McMahan, Ana L Mora, Luc Mouthon, Marlene Rabinovitch, Mauricio Rojas, Kristofer Rubin, Maria Trojanowska, John Varga, Michael L Whitfield, Armando Gabrielli, and Thomas Krieg
MorPhiC Consortium: towards functional characterization of all human genes., Mazhar Adli, Laralynne Przybyla, Tony Burdett, Paul W Burridge, Pilar Cacheiro, Howard Y Chang, Jesse M Engreitz, Luke A Gilbert, William J Greenleaf, Li Hsu, Danwei Huangfu, Ling-Hong Hung, Anshul Kundaje, Sheng Li, Helen Parkinson, Xiaojie Qiu, Paul Robson, Stephan C Schürer, Ali Shojaie, William C Skarnes, Damian Smedley, Lorenz Studer, Wei Sun, Dušica Vidović, Thomas Vierbuchen, Brian S White, Ka Yee Yeung, Feng Yue, Ting Zhou, and The MorPhiC Consortium
Challenges and opportunities for conceiving genetically diverse sickle cell mice., Rafiou Agoro and Gary Churchill
Dynamic single cell transcriptomics defines kidney FGF23/KL bioactivity and novel segment-specific inflammatory targets., Rafiou Agoro, Jered Myslinski, Yamil G Marambio, Danielle Janosevic, Kayleigh N Jennings, Sheng Liu, Lainey M Hibbard, Fang Fang, Pu Ni, Megan L Noonan, Emmanuel Solis, Xiaona Chu, Yue Wang, Pierre C Dagher, Yunlong Liu, Jun Wan, Takashi Hato, and Kenneth E White
Placental and Cord Blood DNA Methylation Changes Associated With Gestational Diabetes Mellitus in a Marginalized Population: The Untold Role of Saturated Fats., Fatima Ahmad, Sidra Aftab Uzair, Arun P Lakshmanan, Shaikha Alabduljabbar, Salma H Ahmed, Basirudeen Syed Ahamed Kabeer, Alexandra Katharina Marr, Tomoshige Kino, Tobias Brummaier, Rose McGready, François Nosten, Damien Chaussabel, Souhaila Al Khodor, and Annalisa Terranegra
Deciphering the Role of Kruppel-like Factor 9 in Sepsis and Immunity: Perspectives from Joint Collective Omics Data and a Literature Review, Mohamed Alfaki, Mohammed Toufiq, Kaavya S, Manikannan Mathayan, Alangudi Natarajan Palaniappan, Anbarasu Deenadayalan, Ramalingam Bethunaickan, Sabri Boughorbel, Yoann Zerbib, Darawan Rinchai, Mathieu Garand, Damien Chaussabel, and Basirudeen Syed Ahamed Kabeer
Polyploid superficial uroepithelial bladder barrier cells express features of cellular senescence across the lifespan and are insensitive to senolytics., Iman M Al-Naggar, Maria Antony, Dylan Baker, Lichao Wang, Lucas Da Cunha Godoy, Chia-Ling Kuo, Matthew O Fraser, Phillip P Smith, Ming Xu, and George A Kuchel
Comprehensive single-cell aging atlas of healthy mammary tissues reveals shared epigenomic and transcriptomic signatures of aging and cancer., Brittany Lynn Angarola, Siddhartha Sharma, Neerja Katiyar, Hyeon Gu Kang, Djamel Nehar-Belaid, SungHee Park, Rachel Gott, Giray N Eryilmaz, Mark A LaBarge, Karolina Palucka, Jeffrey Chuang, Ron Korstanje, Duygu Ucar, and Olga Anczuków
An intranasal subunit vaccine induces protective systemic and mucosal antibody immunity against respiratory viruses in mouse models., Aina Karen Anthi, Anette Kolderup, Eline Benno Vaage, Malin Bern, Sopisa Benjakul, Elias Tjärnhage, Fulgencio Ruso-Julve, Kjell-Rune Jensen, Heidrun Elisabeth Lode, Marina Vaysburd, Jeannette Nilsen, Marie Leangen Herigstad, Siri Aastedatter Sakya, Lisa Tietze, Diego Pilati, Mari Nyquist-Andersen, Mirjam Dürkoop, Torleif Tollefsrud Gjølberg, Linghang Peng, Stian Foss, Morten C Moe, Benjamin E. Low, Michael V. Wiles, David Nemazee, Frode L Jahnsen, John Torgils Vaage, Kenneth A Howard, Inger Sandlie, Leo C James, Gunnveig Grødeland, Fridtjof Lund-Johansen, and Jan Terje Andersen
MIDRC mRALE Mastermind Grand Challenge: AI to predict COVID severity on chest radiographs., Samuel G Armato, Karen Drukker, Lubomir Hadjiiski, Carol C Wu, Jayashree Kalpathy-Cramer, George Shih, Maryellen L Giger, Natalie Baughan, Benjamin Bearce, Adam E Flanders, Robyn L Ball, Kyle J Myers, Heather M Whitney, and The Midrc Grand Challenge Working Group
Comparative genomics reveals common diversity and adaptation to harsh environments in the Arabian Peninsula indigenous chickens., Abdulwahad Assiri, Adriana Vallejo-Trujillo, Mohammed Al-Abri, Hussain Bahbahani, Faisal Almathen, Abulgasim Ahbara, Waleed Al Marzooqi, Abdulfatai Tijjani, Raman Akinyanju Lawal, and Olivier Hanotte
Inhibition of the metalloprotease ADAM19 as a novel senomorphic strategy to ameliorate gut permeability and senescence markers by modulating senescence-associated secretory phenotype (SASP)., Sudipta Bar, Tyler A U Hilsabeck, B Pattavina, José Alberto López-Domínguez, Nathan Basisty, Joanna Bons, Mark Watson, Birgit Schilling, Judith Campisi, Pankaj Kapahi, and Amit Sharma
Stathmin-2 enhances motor axon regeneration after injury independent of its binding to tubulin., Melinda S Beccari, Olatz Arnold-Garcia, Michael W Baughn, Jonathan W Artates, Melissa McAlonis-Downes, Jaisen Lim, Dulce Fernanda Leyva-Cázares, Hugo Isaac Rubio-Lara, Andrea Ramirez-Rodriguez, Carol N Bernal-Buenrostro, Brian Murgia-Bay, Carolina K Rangel, Dong Hyun Kim, Ze'ev Melamed, Cathleen Lutz, Clotilde Lagier-Tourenne, Kevin D Corbett, Jone López-Erauskin, and Don W Cleveland
A call to action for deciphering genetic variants in human pluripotent stem cells for cell therapy., Nissim Benvenisty, Jonathan S Draper, Paul J Gokhale, Lyn Healy, Zoe Hewitt, Deborah Hursh, Adam Hodgson, Tenneille E Ludwig, Nancy Mah, Sarah E McClelland, Milena Mennecozzi, Florian T Merkle, Joanne C Mountford, Martin Pera, Alessandro Prigione, Tristan A Rodriguez, Andrea Rossi, Foad J Rouhani, Kourosh Saeb-Parsy, Lucia Selfa Aspiroz, Nika Shakiba, Claudia Spits, Peter D Tonge, and Ivana Barbaric
Environmental Factors Exacerbate Parkinsonian Phenotypes in an Asian-Specific Knock-In LRRK2 Risk Variant in Mice, Zoë Bichler, Sarivin Vanan, Zhiwei Zhang, Qianying (Sally) Dong, Jolene Wei Ling Lee, Chengwu Zhang, Liting Hang, Mei Jiang, Parasuraman Padmanabhan, Wuan Ting Saw, Zhidong Zhou, Balázs Gulyás, Kah Leong Lim, Li Zeng, and Eng King Tan
Celebrate the art of reproductive research with ReproBioArt!, Ewelina Bolcun-Filas
Celebrate the art of reproductive research with ReproBioArt!, Ewelina Bolcun-Filas
Systematic Ocular Phenotyping of Knockout Mouse Lines Identifies Genes Associated With Age-Related Corneal Dystrophies., Andrew Briere, Peter Vo, Benjamin Yang, David Adams, Takanori Amano, Oana Amarie, Zorana Berberovic, Lynette Bower, Steve D M Brown, Samantha Burrill, Soo Young Cho, Sharon Clementson-Mobbs, Abigail D'souza, Mohammad Eskandarian, Ann M Flenniken, Helmut Fuchs, Valerie Gailus-Durner, Yann Hérault, Martin Hrabe de Angelis, Shundan Jin, Russell Joynson, Yeon Kyung Kang, Haerim Kim, Hiroshi Masuya, Hamid Meziane, Ki-Hoan Nam, Hyuna Noh, Lauryl M J Nutter, Marcela Palkova, Jan Prochazka, Miles Joseph Raishbrook, Fabrice Riet, Jason Salazar, Radislav Sedlacek, Mohammed Selloum, Kyoung Yul Seo, Je Kyung Seong, Hae-Sol Shin, Toshihiko Shiroishi, Michelle Stewart, Karen L. Svenson, Masaru Tamura, Heather Tolentino, Sara Wells, Wolfgang Wurst, Atsushi Yoshiki, Louise Lanoue, K C Kent Lloyd, Brian C Leonard, Michel J Roux, Colin McKerlie, and Ala Moshiri
Cutaneous dysbiosis characterizes the post-allogeneic hematopoietic stem cell transplantation period., Adela R Cardones, Akintunde Emiola, Russell P Hall, Anthony D Sung, Jennifer Zhang, Amy J Petty, Charles Puza, Lauren M Bohannon, Amy T Bush, Meagan V Lew, Elizabeth Fleming, Yingai J Jin, Krista Rowe Nichols, Vaibhav Jain, Simon G Gregory, Keith M Sullivan, Nelson J Chao, and Julia Oh
Workplace perk or pitfall? A qualitative study of genetic counselors' perspectives and experiences with workplace genetic testing., Elizabeth Charnysh, Katherine Hendy, Kerry Ryan, Anya E R Prince, W Gregory Feero, Alyx Vogle, Sarah McCain, Alexandra Truhlar, J Scott Roberts, Charles Lee, Kunal Sanghavi, Wendy R Uhlmann, and the INSIGHT @ Work Consortium
Amyotrophic lateral sclerosis and frontotemporal dementia mutation reduces endothelial TDP-43 and causes blood-brain barrier defects., Ashok Cheemala, Amy L Kimble, Emily N Burrage, Stephen B Helming, Jordan D Tyburski, Nathan K Leclair, Omar M Omar, Aamir Zuberi, Melissa Murphy, Evan R Jellison, Bo Reese, Xiangyou Hu, Cathleen Lutz, Riqiang Yan, and Patrick A Murphy
Machine Learning to Detect Cervical Spine Fractures Missed by Radiologists on CT: Analysis Using Seven Award-Winning Models from the RSNA 2022 Cervical Spine Fracture AI Challenge., Yingming Amy Chen, Zixuan Hu, Kevin Daniel Shek, Jefferson Wilson, Fahad Saud S Alotaibi, Christopher D Witiw, Hui Ming Lin, Robyn L Ball, Markand Patel, Shobhit Mathur, Ervin Sejdić, and Errol Colak
SINE retrotransposons import polyadenylation signals to 3'UTRs in dog (Canis familiaris)., Jessica D Choi, Lelani A Del Pinto, and Nathan B Sutter
Prediction of Patient Drug Response via 3D Bioprinted Gastric Cancer Model Utilized Patient-Derived Tissue Laden Tissue-Specific Bioink., Yoo-Mi Choi, Deukchae Na, Goeun Yoon, Jisoo Kim, Seoyeon Min, Hee-Gyeong Yi, Soo-Jeong Cho, Jae Hee Cho, Charles Lee, and Jinah Jang
Podoplanin-positive cell-derived small extracellular vesicles contribute to cardiac amyloidosis after myocardial infarction., Maria Cimini, Ulrich H E Hansmann, Carolina Gonzalez, Andrew D Chesney, May M Truongcao, Erhe Gao, Tao Wang, Rajika Roy, Elvira Forte, Vandana Mallaredy, Charan Thej, Ajit Magadum, Darukeshwara Joladarashi, Cindy Benedict, Water J Koch, Çağla Tükel, and Raj Kishore
Rare disease gene association discovery in the 100,000 Genomes Project., Valentina Cipriani, Letizia Vestito, Emma F Magavern, Julius O B Jacobsen, Gavin Arno, Elijah R Behr, Katherine A Benson, Marta Bertoli, Detlef Bockenhauer, Michael R Bowl, Kate Burley, Li F Chan, Patrick Chinnery, Peter J Conlon, Marcos A Costa, Alice E Davidson, Sally J Dawson, Elhussein A E Elhassan, Sarah E Flanagan, Marta Futema, Daniel P Gale, Sonia García-Ruiz, Cecilia Gonzalez Corcia, Helen R Griffin, Sophie Hambleton, Amy R Hicks, Henry Houlden, Richard S Houlston, Sarah A Howles, Robert Kleta, Iris Lekkerkerker, Siying Lin, Petra Liskova, Hannah H Mitchison, Heba Morsy, Andrew D Mumford, William G Newman, Ruxandra Neatu, Edel A O'Toole, Albert C M Ong, Alistair T Pagnamenta, Shamima Rahman, Neil Rajan, Peter N Robinson, Mina Ryten, Omid Sadeghi-Alavijeh, John A Sayer, Claire L Shovlin, Jenny C Taylor, Omri Teltsh, Ian Tomlinson, Arianna Tucci, Clare Turnbull, Albertien M van Eerde, James S Ware, Laura M Watts, Andrew R Webster, Sarah K Westbury, Sean L Zheng, Mark Caulfield, and Damian Smedley
Patterns of Associations with Epidemiologic Factors by High-Grade Serous Ovarian Cancer Gene Expression Subtypes., Lindsay J Collin, Kara L Cushing-Haugen, Kathryn L Terry, Ellen L Goode, Anna H Wu, Holly R Harris, Naoko Sasamoto, Daniel W Cramer, Francesmary Modugno, Esther Elishaev, Zhuxuan Fu, Kirsten B Moysich, Peter A Fasching, Celeste Leigh Pearce, Usha Menon, Aleksandra Gentry-Maharaj, Simon A Gayther, Nicolas Wentzensen, Marc T Goodman, Joshy George, Aline Talhouk, Michael S Anglesio, Susan J Ramus, David D L Bowtell, Shelley S Tworoger, Joellen M Schildkraut, Penelope M Webb, and Jennifer A Doherty
System vaccinology analysis of predictors and mechanisms of antibody response durability to multiple vaccines in humans., Mario Cortese, Thomas Hagan, Nadine Rouphael, Sheng-Yang Wu, Xia Xie, Dmitri Kazmin, Florian Wimmers, Shakti Gupta, Robbert van der Most, Margherita Coccia, Prabhu S Aranuchalam, Helder I Nakaya, Yating Wang, Elizabeth Coyle, Shu Horiuchi, Hanchih Wu, Mary Bower, Aneesh Mehta, Clifford Gunthel, Steve E Bosinger, Yuri Kotliarov, Foo Cheung, Pamela L Schwartzberg, Ronald N Germain, John Tsang, Shuzhao Li, Randy Albrecht, Hideki Ueno, Shankar Subramaniam, Mark J Mulligan, Surender Khurana, Hana Golding, and Bali Pulendran
Ferroptosis regulates hemolysis in stored murine and human red blood cells., Angelo D'Alessandro, Gregory R Keele, Ariel Hay, Travis Nemkov, Eric J Earley, Daniel Stephenson, Matthew J Vincent, Xutao Deng, Mars Stone, Monika Dzieciatkowska, Kirk C Hansen, Steven Kleinman, Steven L Spitalnik, Nareg Roubinian, Philip J Norris, Michael P Busch, Grier P Page, Brent R Stockwell, Gary Churchill, and James C Zimring
The metabolic basis of cancer-related fatigue., Robert Dantzer, Brandon Chelette, Elisabeth G Vichaya, A Phillip West, and Aaron Grossberg
A year-long field study of buried plastics reveals underestimation of plastic pollution on Hawaiian beaches., Astrid E Delorme, Olivier Poirion, Laurent Lebreton, Pierre-Yves le Gac, Kimeona Kāne, and Sarah-Jeanne Royer
A ventilated perfused lung model platform to dissect the response of the lungs to viral infection., I Deniz Derman, Mecit Altan Alioglu, Joseph Christakiran Moses, Zissis C Chroneos, Yasar Ozer Yilmaz, Dishary Banerjee, Jonathan Koff, Syed Hasan Askari Rizvi, Danielle Nicole Klunk, Nazmiye Celik, Sirisha Pochareddy, Todd M Umstead, Ilayda Namli, Sarah E Holton, Carmen Mikacenic, Jessica L Thompson, Diana Cadena, Danielle Reifsnyder Hickey, Momoka Nagamine, Prajakta Warang, Michael Schotsaert, Phylip Chen, Mark E Peeples, Karolina Palucka, and Ibrahim T Ozbolat
Harnessing the human gut microbiota: an emerging frontier in combatting multidrug-resistant bacteria., Wenwen Ding, Yiwen Cheng, Xia Liu, Zhangcheng Zhu, Lingbin Wu, Jie Gao, Wenhui Lei, Yating Li, Xin Zhou, Jian Wu, Yongtao Gao, Zongxin Ling, and Ruilai Jiang
TEAL-Seq: targeted expression analysis sequencing., Georgia Doing, Priya Shanbhag, Isaac Bell, Sara Cassidy, Efthymios Motakis, Elizabeth Aiken, Julia Oh, and Mark D Adams
Non-homologous sequence interactions during meiosis: meiotic challenges and evolutionary opportunities., Beth L Dumont and Mary Ann Handel
Worldwide Innovative Network (WIN) Consortium in Personalized Cancer Medicine: Bringing next-generation precision oncology to patients., Wafik S El-Deiry, Catherine Bresson, Fanny Wunder, Benedito A Carneiro, Don S Dizon, Jeremy L Warner, Stephanie L Graff, Christopher G Azzoli, Eric T Wong, Liang Cheng, Sendurai A Mani, Howard P Safran, Casey Williams, Tobias Meissner, Benjamin Solomon, Eitan Rubin, Angel Porgador, Guy Berchem, Pierre Saintigny, Amir Onn, Jair Bar, Raanan Berger, Manon Gantenbein, Zhen Chen, Cristiano de Pádua Souza, Rui Manuel Vieira Reis, Marina Sekacheva, Andrés Cervantes, William L Dahut, Christina M Annunziata, Kerri Gober, Khaled M Musallam, Humaid O Al-Shamsi, Ibrahim Abu-Gheida, Ramon Salazar, Sewanti Limaye, Adel T Aref, Roger R Reddel, Mohammed Ussama Al Homsi, Abdul Rouf, Said Dermime, Jassim Al Suwaidi, Catalin Vlad, Rares Buiga, Amal Al Omari, Hikmat Abdel-Razeq, Luis F Oñate-Ocaña, Finn Cilius Nielsen, Leah C. Graham, Jens Rueter, Anthony M Joshua, Eugenia Girda, Steven Libutti, Gregory Riedlinger, Mohammed E Salem, Carol J Farhangfar, Ruben A Mesa, Bishoy M Faltas, Olivier Elemento, C S Pramesh, Manju Sengar, Satoru Aoyama, Sadakatsu Ikeda, Ioana Berindan-Neagoe, Himabindu Gaddipati, Mandar Kulkarni, Elisabeth Auzias, Maria Gerogianni, Nicolas Wolikow, Simon Istolainen, Pessie Schlafrig, Naftali Z Frankel, Amanda R Ferraro, Jim Palma, Alejandro Piris Gimenez, Alberto Hernando-Calvo, Enriqueta Felip, Apostolia M Tsimberidou, Roy S Herbst, Josep Tabernero, Richard L Schilsky, Jia Liu, Yves Lussier, Jacques Raynaud, Gerald Batist, Shai Magidi, and Razelle Kurzrock
Systematic optimization and prediction of cre recombinase for precise genome editing in mice., Valerie Erhardt, Elli I Hartig, Kristian Lorenzo, Hannah R Megathlin, Basile Tarchini, and Vishnu Hosur
A compendium of human gene functions derived from evolutionary modelling., Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Anushya Muruganujan, Suzanna E Lewis, Dustin Ebert, Tremayne Mushayahama, Gene Ontology Consortium, and Paul D Thomas
Clearance of p21 highly expressing senescent cells accelerates cutaneous wound healing., Nathan S Gasek, Pengyi Yan, Junyu Zhu, K-Raman Purushothaman, Taewan Kim, Lichao Wang, Binsheng Wang, William F Flynn, Mingda Sun, Chun Guo, Billy Huggins, Roshanak Sharafieh, Yueying Zhou, Vojtech Parizek, Tamar Tchkonia, James L Kirkland, Saranya P Wyles, and Ming Xu
Virtual Cancer Genomics: An Accessible and Effective Approach to Research Training for Undergraduates., Erica L Gerace and Sarah Wojiski
Intrinsic-dimension analysis for guiding dimensionality reduction and data fusion in multi-omics data processing., Jessica Gliozzo, Mauricio Soto-Gomez, Valentina Guarino, Arturo Bonometti, Alberto Cabri, Emanuele Cavalleri, Justin Reese, Peter N Robinson, Marco Mesiti, Giorgio Valentini, and Elena Casiraghi
A biometric survey of known and prospective murine models of posterior microphthalmia-nanophthalmia., Navdeep Gogna, Jai Pinkney, Lisa Stone, Mhd Mustafa Khorzom, Fuxin Zhao, Gayle B. Collin, Juergen K. Naggert, Mark P. Krebs, and Patsy M. Nishina
An ontology-based rare disease common data model harmonising international registries, FHIR, and Phenopackets., Adam S L Graefe, Miriam R Hübner, Filip Rehburg, Steffen Sander, Sophie A I Klopfenstein, Samer Alkarkoukly, Ana Grönke, Annic Weyersberg, Daniel Danis, Jana Zschüntzsch, Elisabeth F Nyoungui, Susanna Wiegand, Peter Kühnen, Peter N Robinson, Oya Beyan, and Sylvia Thun
A Systematic Approach to Prioritise Diagnostically Useful Findings for Inclusion in Electronic Health Records as Discrete Data to Improve Clinical Artificial Intelligence Tools and Genomic Research., P Guillod, A Savvas, Peter N Robinson, D Nai, K N Naresh, G Ott, A Schuh, W A Sewell, M Anderson, N Matentzoglu, D Durgavarjhula, M L Xu, M J Druzdzel, and J M Astle
Neural network analysis as a novel skin outcome in a trial of belumosudil in patients with systemic sclerosis., Ilayda Gunes, Elana J Bernstein, Shawn E Cowper, Gauri Panse, Niki Pradhan, Lucy Duran Camacho, Nicolas Page, Elizabeth Bundschuh, Alyssa Williams, Mary Carns, Kathleen Aren, Sarah Fantus, Elizabeth R Volkmann, Heather Bukiri, Chase Correia, Vijaya B Kolachalama, F Perry Wilson, Seamus Mawe, J Matthew Mahoney, and Monique Hinchcliff
Chapter 27 - The Mouse Developmental Anatomy Ontology (EMAPA) and the Gene Expression Database for Mouse Development (GXD), Terry F. Hayamizu and Martin Ringwald
The contribution of de novo coding mutations to meningomyelocele., Yoo-Jin Jiny Ha, Ashna Nisal, Isaac Tang, Chanjae Lee, Ishani Jhamb, Cassidy Wallace, Robyn Howarth, Sarah Schroeder, Keng Ioi Vong, Naomi Meave, Fiza Jiwani, Chelsea Barrows, Sangmoon Lee, Nan Jiang, Arzoo Patel, Krisha Bagga, Niyati Banka, Liana Friedman, Francisco A Blanco, Seyoung Yu, Soeun Rhee, Hui Su Jeong, Isaac Plutzer, Michael B Major, Béatrice Benoit, Christian Poüs, Caleb Heffner, Zoha Kibar, Gyang Markus Bot, Hope Northrup, Kit Sing Au, Madison Strain, Allison E Ashley-Koch, Richard H Finnell, Joan T Le, Hal S Meltzer, Camila Araujo, Helio R Machado, Roger E Stevenson, Anna Yurrita, Sara Mumtaz, Awais Ahmed, Mulazim Hussain Khara, Osvaldo M Mutchinick, José Ramón Medina-Bereciartu, Friedhelm Hildebrandt, Gia Melikishvili, Ahmed I Marwan, Valeria Capra, Mahmoud M Noureldeen, Aida M S Salem, Mahmoud Y Issa, Maha S Zaki, Libin Xu, Ji Eun Lee, Donghyuk Shin, Anna Alkelai, Alan R Shuldiner, Stephen F Kingsmore, Stephen A Murray, Heon Yung Gee, W Todd Miller, Kimberley F Tolias, John B Wallingford, Spina Bifida Sequencing Consortium, Sangwoo Kim, and Joseph G Gleeson
RSNA 2023 Abdominal Trauma AI Challenge: Review and Outcomes., Sebastiaan Hermans, Zixuan Hu, Robyn L Ball, Hui Ming Lin, Luciano M Prevedello, Ferco H Berger, Ibrahim Yusuf, Jeffrey D Rudie, Maryam Vazirabad, Adam E Flanders, George Shih, John Mongan, Savvas Nicolaou, Brett S Marinelli, Melissa A Davis, Kirti Magudia, Ervin Sejdić, and Errol Colak
ML-UrineQuant: A machine learning program for identifying and quantifying mouse urine on absorbent paper., Warren G Hill, Bryce MacIver, Gary Churchill, Mariana G DeOliveira, Mark L Zeidel, and Marcelo Cicconet
Species- and strain-specific microbial modulation of interferon, innate immunity, and epithelial barrier in 2D air-liquid interface respiratory epithelial cultures., Mian Horvath, Ruoyun Xiong, Diana Cadena, Megan Callender, Elizabeth Aiken, Anita Y Voigt, Ryan Caldwell, José Fachi, Blanda Di Luccia, Zoe Scholar, Peter Yu, Andrew Salner, Marco Colonna, Karolina Palucka, and Julia Oh
Marmosets as model systems for the study of Alzheimer's disease and related dementias: Substantiation of physiological tau 3R and 4R isoform expression and phosphorylation., Hasi Huhe, Sarah M Shapley, Duc M Duong, Fang Wu, Seung-Kwon Ha, Sang-Ho Choi, Julia Kofler, Yongshan Mou, Thais Rafael Guimaraes, Amantha Thathiah, Caroline M Watson, Lauren K H Schaeffer, Gregory W. Carter, Nicholas T Seyfried, Afonso C Silva, and Stacey J Sukoff Rizzo
Structural polymorphism and diversity of human segmental duplications., Hyeonsoo Jeong, Philip C Dishuck, DongAhn Yoo, William T Harvey, Katherine M Munson, Alexandra P Lewis, Jennifer Kordosky, Gage H Garcia, Human Genome Structural Variation Consortium (HGSVC), Feyza Yilmaz, Pille Hallast, Charles Lee, Tomi Pastinen, and Evan E Eichler
Ischemic Conditioning Promotes Transneuronal Survival and Stroke Recovery via CD36-Mediated Efferocytosis., Hyunwoo Ju, Il-Doo Kim, Ina Pavlova, Shang Mu, Keun Woo Park, Joseph Minkler, Ahmed Madkoor, Wei Wang, Xiaoman Wang, Zhuhao Wu, Jiwon Yang, Maria Febbraio, John W Cave, and Sunghee Cho
Clonal dynamics and somatic evolution of haematopoiesis in mouse., Chiraag D Kapadia, Nicholas Williams, Kevin J Dawson, Caroline Watson, Matthew J Yousefzadeh, Duy Le, Kudzai Nyamondo, Sreeya Kodavali, Alex Cagan, Sarah Waldvogel, Xiaoyan Zhang, Josephine De La Fuente, Daniel Leongamornlert, Emily Mitchell, Marcus A Florez, Krzysztof Sosnowski, Rogelio Aguilar, Alejandra Martell, Anna Guzman, David E Harrison, Laura J Niedernhofer, Katherine Y King, Peter J Campbell, Jamie Blundell, Margaret A Goodell, and Jyoti Nangalia
Melanocortin 4 Receptor-Dependent Mechanism of ACTH in Preventing Anxiety-Like Behaviors and Normalizing Astrocyte Proteins after Early Life Seizures., Mohamed R Khalife, Colin Villarin, Juan Manuel Ruiz, Sam A McClelland, Khalil Abed Rabbo, J Matthew Mahoney, Rod C Scott, and Amanda E Hernan
FYN regulates aqueous humor outflow and IOP through the phosphorylation of VE-CADHERIN., Krishnakumar Kizhatil, Graham Clark, Daniel K Sunderland, Aakriti Bhandari, Logan J Horbal, Revathi Balasubramanian, and Simon W M John
Workshop Report-Heterogeneity and Successful Aging Part I: Heterogeneity in Aging-Challenges and Opportunities., George A Kuchel, Andrea L Hevener, J Graham Ruby, Paola Sebastiani, and Vivek Kumar
Workshop Report-Heterogeneity and Successful Aging Part II: Approaches to Investigate Heterogeneity in Aging Research., Vivek Kumar, Andrea L Hevener, J Graham Ruby, Paola Sebastiani, George A Kuchel, and Participants of the NIA Heterogeneity and Successful Aging Workshop
Extracellular peroxiredoxin 5 exacerbates atherosclerosis via the TLR4/MyD88 pathway., Hyae Yon Kweon, Eun Ju Song, Se-Jin Jeong, SoonHo Lee, Seong-Keun Sonn, Seungwoon Seo, Jing Jin, Sinai Kim, Tae Kyeong Kim, Shin Hye Moon, Doyeon Kim, Young Mi Park, Hyun Ae Woo, and Goo Taeg Oh
Genomic reanalysis of a pan-European rare-disease resource yields new diagnoses., Steven Laurie, Wouter Steyaert, Elke de Boer, Kiran Polavarapu, Nika Schuermans, Anna K Sommer, German Demidov, Kornelia Ellwanger, Ida Paramonov, Coline Thomas, Stefan Aretz, Jonathan Baets, Elisa Benetti, Gemma Bullich, Patrick F Chinnery, Jill Clayton-Smith, Enzo Cohen, Daniel Danis, Jean-Madeleine de Sainte Agathe, Anne-Sophie Denommé-Pichon, Jordi Diaz-Manera, Stephanie Efthymiou, Laurence Faivre, Marcos Fernandez-Callejo, Mallory Freeberg, José Garcia-Pelaez, Lena Guillot-Noel, Tobias B Haack, Mike Hanna, Holger Hengel, Rita Horvath, Henry Houlden, Adam Jackson, Lennart Johansson, Mridul Johari, Erik-Jan Kamsteeg, Melanie Kellner, Tjitske Kleefstra, Didier Lacombe, Hanns Lochmüller, Estrella López-Martín, Alfons Macaya, Anna Marcé-Grau, Aleš Maver, Heba Morsy, Francesco Muntoni, Francesco Musacchia, Isabelle Nelson, Vincenzo Nigro, Catarina Olimpio, Carla Oliveira, Jaroslava Paulasová Schwabová, Martje G Pauly, Borut Peterlin, Sophia Peters, Rolph Pfundt, Giulio Piluso, Davide Piscia, Manuel Posada, Selina Reich, Alessandra Renieri, Lukas Ryba, Karolis Šablauskas, Marco Savarese, Ludger Schöls, Leon Schütz, Verena Steinke-Lange, Giovanni Stevanin, Volker Straub, Marc Sturm, Morris A Swertz, Marco Tartaglia, Iris B A W Te Paske, Rachel Thompson, Annalaura Torella, Christina Trainor, Bjarne Udd, Liedewei Van de Vondel, Bart van de Warrenburg, Jeroen van Reeuwijk, Jana Vandrovcova, Antonio Vitobello, Janet Vos, Emílie Vyhnálková, Robin Wijngaard, Carlo Wilke, Doreen William, Jishu Xu, Burcu Yaldiz, Luca Zalatnai, Birte Zurek, Solve-RD DITF-GENTURIS, Solve-RD DITF-ITHACA, Solve-RD DITF-EURO-NMD, Solve-RD DITF-RND, Solve-RD consortium, Anthony J Brookes, Teresinha Evangelista, Christian Gilissen, Holm Graessner, Nicoline Hoogerbrugge, Stephan Ossowski, Olaf Riess, Rebecca Schüle, Matthis Synofzik, Alain Verloes, Leslie Matalonga, Han G Brunner, Katja Lohmann, Richarda M de Voer, Ana Töpf, Lisenka E L M Vissers, Sergi Beltran, and Alexander Hoischen
Antisense oligonucleotide-mediated TRA2β poison exon inclusion induces the expression of a lncRNA with anti-tumor effects., Nathan Leclair, Mattia Brugiolo, SungHee Park, Maeva Devoucoux, Laura M Urbanski, Brittany Lynn Angarola, Marina Yurieva, and Olga Anczuków
Gut metagenomes reveal interactions between dietary restriction, ageing and the microbiome in genetically diverse mice., Lev Litichevskiy, Maya Considine, Jasleen Gill, Vasuprada Shandar, Timothy O Cox, Hélène C Descamps, Kevin M Wright, Kevin R Amses, Lenka Dohnalová, Megan J Liou, Monika Tetlak, Mario R Galindo-Fiallos, Andrea C Wong, Patrick Lundgren, Junwon Kim, Giulia T Uhr, Ryan J Rahman, Sydney Mason, Carter Merenstein, Frederic D Bushman, Anil Raj, Fiona Harding, Zhenghao Chen, G V Prateek, Martin Mullis, Andrew Deighan, Laura Robinson, Ceylan Tanes, Kyle Bittinger, Meenakshi Chakraborty, Ami S Bhatt, Hongzhe Li, Ian Barnett, Emily R Davenport, Karl W Broman, Maayan Levy, Robert L Cohen, David Botstein, Adam Freund, Andrea Di Francesco, Gary Churchill, Mingyao Li, and Christoph A Thaiss
HAND1, partially mediated through ape-specific LTR binding, is essential for human extra-embryonic mesenchyme derivation from iPSCs., Zukai Liu, Yuliana Tan, William F Flynn, Lili Sun, Ponthip Pratumkaew, Juliana Alcoforado Diniz, Nélio A J Oliveira, Justin A McDonough, William C Skarnes, and Paul Robson
Predicting the impact of rare variants on RNA splicing in CAGI6., Jenny Lord, Carolina Jaramillo Oquendo, Htoo A Wai, Andrew G L Douglas, David J Bunyan, Yaqiong Wang, Zhiqiang Hu, Zishuo Zeng, Daniel Danis, Panagiotis Katsonis, Amanda Williams, Olivier Lichtarge, Yuchen Chang, Richard D Bagnall, Stephen M Mount, Brynja Matthiasardottir, Chiaofeng Lin, Thomas van Overeem Hansen, Raphael Leman, Alexandra Martins, Claude Houdayer, Sophie Krieger, Constantina Bakolitsa, Yisu Peng, Akash Kamandula, Predrag Radivojac, and Diana Baralle
The impact of co-housing on murine aging studies., Alison Luciano and Gary Churchill
Necrosis drives susceptibility to Mycobacterium tuberculosis in Polg(D257A) mutator mice, C J Mabry, C G Weindel, L W Stranahan, Jordyn J VanPortfliet, J R Davis, E L Martinez, A Phillip West, K L Patrick, and R O Watson
Genetic context modulates aging and degeneration in the murine retina., Olivia J Marola, Michael MacLean, Travis L Cossette, Cory A Diemler, Amanda A Hewes, Alaina M Reagan, Jonathan Nyandu Kanyinda, Daniel A Skelly, and Gareth R Howell
Chromosome 4 Duplication Associated with Strabismus Leads to Gene Expression Changes in iPSC-Derived Cortical Neurons., Mayra Martinez-Sanchez, William C Skarnes, Ashish Jain, Sampath Vemula, Liang Sun, Shira Rockowitz, and Mary C Whitman
The Unified Phenotype Ontology : a framework for cross-species integrative phenomics., Nicolas Matentzoglu, Susan M. Bello, Ray Stefancsik, Sarah M Alghamdi, Anna V Anagnostopoulos, James P Balhoff, Meghan A Balk, Yvonne M Bradford, Yasemin Bridges, Tiffany J Callahan, Harry Caufield, Alayne Cuzick, Leigh Carmody, Anita R Caron, Vinicius de Souza, Stacia R Engel, Petra Fey, Malcolm Fisher, Sarah Gehrke, Christian Grove, Peter Hansen, Nomi L Harris, Midori A Harris, Laura Harris, Arwa Ibrahim, Julius O B Jacobsen, Sebastian Köhler, Julie A McMurry, Violeta Munoz-Fuentes, Monica C Munoz-Torres, Helen Parkinson, Zoë M Pendlington, Clare Pilgrim, Sofia M C Robb, Peter N Robinson, James Seager, Erik Segerdell, Damian Smedley, Elliot Sollis, Sabrina Toro, Nicole Vasilevsky, Valerie Wood, Melissa A Haendel, Christopher J Mungall, James A McLaughlin, and David Osumi-Sutherland
Innovative strategies for the discovery of new drugs against androgenetic alopecia., Kevin J McElwee and John P Sundberg
A New Targeted Transgenic Mouse Line for the Study of Protocadherin γC4., Cathy M McLeod, Camille M Hanes, Leah C Fuller, Samjhana Bhandari, Hannah G Lanthier, Robert W. Burgess, Joshua A Weiner, and Andrew M Garrett
Alpha-smooth muscle actin-expressing dermal sheath cells are a major cellular contributor to heterotopic subcutaneous ossifications in a mouse model of Albright hereditary osteodystrophy., Patrick McMullan, Peter Maye, Sierra H Root, Qingfen Yang, Sarah Edie, David Rowe, Ivo Kalajzic, and Emily L Germain-Lee
Introducing "Identification Probability" for Automated and Transferable Assessment of Metabolite Identification Confidence in Metabolomics and Related Studies., Thomas O Metz, Christine H Chang, Vasuk Gautam, Afia Anjum, Siyang Tian, Fei Wang, Sean M Colby, Jamie R Nunez, Madison R Blumer, Arthur S Edison, Oliver Fiehn, Dean P Jones, Shuzhao Li, Edward T Morgan, Gary J Patti, Dylan H Ross, Madelyn R Shapiro, Antony J Williams, and David S Wishart
Rapid changes in plasma corticosterone and medial amygdala transcriptome profiles during social status change reveal molecular pathways associated with a major life history transition in mouse dominance hierarchies., Tyler M Milewski, Won Lee, Rebecca L Young, Hans A Hofmann, and James P Curley
Integrating exposomics into biomedicine., Gary W Miller and Banbury Exposomics Consortium
Single-cell and bulk transcriptional profiling of mouse ovaries reveals novel genes and pathways associated with DNA damage response in oocytes., Monique Mills, Chihiro Emori, Parveen Kumar, Zachary Boucher, Joshy George, and Ewelina Bolcun-Filas
A Framework for Strengthening The Quantitative Skills/Reasoning Support Ecosystem at Small Liberal Arts Colleges, Laura J. Muller and Melissa Eblen-Zayas
SARS-CoV-2 induced immune perturbations in infants vary with disease severity and differ from adults' responses., Djamel Nehar-Belaid, Asunción Mejías, Zhaohui Xu, Radu Marches, Rushil Yerrabelli, Guo Chen, Sara Mertz, Fang Ye, Pablo J Sánchez, John S Tsang, Teresa Aydillo, Lisa Miorin, Anastasija Cupic, Adolfo García-Sastre, Duygu Ucar, Jacques Banchereau, Virginia Pascual, and Octavio Ramilo
Alternative splicing of transposable elements in human breast cancer., Alex V Nesta, Diogo F T Veiga, Jacques Banchereau, Olga Anczuków, and Christine R Beck
Replacing non-biomedical concepts improves embedding of biomedical concepts., Enock Niyonkuru, Mauricio Soto Gomez, Elena Casarighi, Stephan Antogiovanni, Hannah Blau, Justin T Reese, Giorgio Valentini, and Peter N Robinson
The multilayered transcriptional architecture of glioblastoma ecosystems., Masashi Nomura, Avishay Spitzer, Kevin C Johnson, Luciano Garofano, Djamel Nehar-Belaid, Noam Galili Darnell, Alissa C Greenwald, Lillian Bussema, Young Taek Oh, Frederick S Varn, Fulvio D'Angelo, Simon Gritsch, Kevin J Anderson, Simona Migliozzi, L Nicolas Gonzalez Castro, Tamrin ChowdhFury, Nicolas Robine, Catherine Reeves, Jong Bae Park, Anuja Lipsa, Frank Hertel, Anna Golebiewska, Simone P Niclou, Labeeba Nusrat, Sorcha Kellet, Sunit Das, Hyo Eun Moon, Sun Ha Paek, Franck Bielle, Alice Laurenge, Anna Luisa Di Stefano, Bertrand Mathon, Alberto Picca, Marc Sanson, Shota Tanaka, Nobuhito Saito, David M Ashley, Stephen T Keir, Keith L Ligon, Jason T Huse, W K Alfred Yung, Anna Lasorella, Roel G W Verhaak, Antonio Iavarone, Mario L Suvà, and Itay Tirosh
Health Professionals' Preferences for Next-Generation Sequencing in the Diagnosis of Suspected Genetic Disorders in the Paediatric Population., Mario Cesare Nurchis, Gerardo Altamura, Gian Marco Raspolini, Enrico Capobianco, Luca Salmasi, and Gianfranco Damiani
The Missing Half: Why Sex Differences Matter in Alzheimer's Disease., Kristen M S O'Connell
Spatiotemporal metabolic mapping of ex-situ preserved hearts subjected to dialysis by integration of bio-SPME sampling with non-targeted metabolipidomic profiling., Mariola Olkowicz, Frank Yu, Juglans Souto Alvarez, Roberto Vanin Pinto Ribeiro, Roizar Rosales, Liming Xin, Miao Yu, Karol Jaroch, Mitchell Brady Adamson, Ved Bissoondath, Filio Billia, Mitesh Vallabh Badiwala, and Janusz Pawliszyn
Muscle-derived myostatin is a major endocrine driver of follicle-stimulating hormone synthesis., Luisina Ongaro, Xiang Zhou, Ying Wang, Hailey Schultz, Ziyue Zhou, Evan R S Buddle, Emilie Brûlé, Yeu-Farn Lin, Gauthier Schang, Adam Hagg, Roselyne Castonguay, Yewei Liu, Gloria H Su, Nabil G Seidah, Kevin C Ray, Seth J Karp, Ulrich Boehm, Frederique Ruf-Zamojski, Stuart C Sealfon, Kelly L Walton, Se-Jin Lee, and Daniel J Bernard
Hippocampal-prefrontal functional neural networks in a rat model of fragile X syndrome are poorly organized with limited resiliency., Mohamed Ouardouz, Patrick Jasinski, Mohamed Khalife, J Matthew Mahoney, Amanda E Hernan, and Rod C Scott
Repeated Measures Latent Dirichlet Allocation for Longitudinal Microbiome Analysis, Namitha Viona Pais, Nalini Ravishanker, Sanguthevar Rajasekaran, and George M. Weinstock
Assessment of Antimicrobial Therapy in Eradicating Chlamydia muridarum in Research Mice: Immune Status and Its Impact on Outcomes., Michael B Palillo, Sebastian E Carrasco, Noah Mishkin, Jack A Palillo, Denise B Lynch, Samira Lawton, Mert Aydin, Anthony J Mourino, Neil S Lipman, and Rodolfo J Ricart Arbona
Genetic variation modulates susceptibility to aberrant DNA hypomethylation and imprint deregulation in naive pluripotent stem cells., C Parikh, R A Glenn, Y Shi, K Chatterjee, K Kasliwal, Emily Swanzey, S Singer, S C Do, Y Zhan, Y Furuta, M Tahiliani, E Apostolou, A Polyzos, R Koche, J G Mezey, T Vierbuchen, and M Stadtfeld
Activin E is a new guardian protecting against hepatic steatosis via inhibiting lipolysis in white adipose tissue., Shi-Young Park, Yoonil Cho, Sae-Mi Son, Jang Ho Hur, Yeongmin Kim, Hyunhee Oh, Hui-Young Lee, Sungwon Jung, Sanghee Park, Il-Young Kim, Se-Jin Lee, and Cheol Soo Choi
CT-derived fat density as a predictor of cause-specific mortality in patients undergoing TAVI: Findings from a large registry subanalysis., Matej Pekař, Piotr Branny, Radim Špaček, Otakar Jiravský, Jan Novák, Jakub Balušík, Daniel Daniš, Jan Hečko, Marek Kantor, Bogna Jiravská Godula, Lubomír Blaha, Radek Neuwirth, and Martin Šimek
Biological databases in the age of generative artificial intelligence., Mihai Pop, Teresa K Attwood, Judith A. Blake, Philip E Bourne, Ana Conesa, Terry Gaasterland, Lawrence Hunter, Carl Kingsford, Oliver Kohlbacher, Thomas Lengauer, Scott Markel, Yves Moreau, William S Noble, Christine Orengo, B F Francis Ouellette, Laxmi Parida, Natasa Przulj, Teresa M Przytycka, Shoba Ranganathan, Russell Schwartz, Alfonso Valencia, and Tandy Warnow
Preclinical use of a clinically-relevant scAAV9/SUMF1 vector for the treatment of multiple sulfatase deficiency., Maximiliano Presa, Rachel M Bailey, Somdatta Ray, Lauren Bailey, Saurabh Tata, Tara Murphy, Pierre-Alexandre Piec, Harold Combs, Steven J Gray, and Cathleen Lutz
Comparison of Lysis and Amplification Methodologies for Optimal 16S rRNA Gene Profiling for Human and Mouse Microbiome Studies., Farzaneh Rastegari, Mark Driscoll, Jesse D Riordan, Joseph H Nadeau, Jethro Johnson, and George M. Weinstock
Chromatin State Maps of Blood Pressure-Relevant Renal Segments Reveal Potential Regulatory Role for SNPs., Atrayee Ray, Chun Yang, Cary Stelloh, Monika Tutaj, Pengyuan Liu, Yong Liu, Qiongzi Qiu, Paul L Auer, Chien-Wei Lin, Michael E Widlansky, Aron M Geurts, Allen W Cowley, Mingyu Liang, Anne E Kwitek, Andrew S Greene, and Sridhar Rao
Arginine metabolism is a biomarker of red blood cell and human aging., Julie A Reisz, Eric J Earley, Travis Nemkov, Alicia Key, Daniel Stephenson, Gregory R Keele, Monika Dzieciatkowska, Steven L Spitalnik, Eldad A Hod, Steven Kleinman, Nareg H Roubinian, Mark T Gladwin, Kirk C Hansen, Philip J Norris, Michael P Busch, James C Zimring, Gary Churchill, Grier P Page, and Angelo D'Alessandro
Spatiotemporal Profiling Defines Persistence and Resistance Dynamics during Targeted Treatment of Melanoma., Jill C Rubinstein, Sergii Domanskyi, Todd B Sheridan, Brian J Sanderson, SungHee Park, Jessica Kaster, Haiyin Li, Olga Anczuków, Meenhard Herlyn, and Jeffrey Chuang
Exploring the composition of placental microbiome and its potential origin in preterm birth., Marwa Saadaoui, Mohamed Nadhir Djekidel, Selvasankar Murugesan, Manoj Kumar, Duaa Elhag, Parul Singh, Basirudeen Syed Ahamed Kabeer, Alexandra Katharina Marr, Tomoshige Kino, Tobias Brummaier, Rose McGready, François Nosten, Damien Chaussabel, Annalisa Terranegra, and Souhaila Al Khodor
Machine vision-based frailty assessment for genetically diverse mice., Gautam S Sabnis, Gary Churchill, and Vivek Kumar
Chapter 29 - The informatics of developmental phenotypes, Paul N. Schofield, Robert Hoehndorf, Georgios V. Gkoutos, and Cynthia Smith