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Submissions from 2010

Mouse BMD quantitative trait loci show improved concordance with human genome-wide association loci when recalculated on a new, common mouse genetic map., Bicknell C. Ackert, D Karasik, Q Li, R V. Smith, Y H. Hsu, G A. Churchill, B J. Paigen, and S W. Tsaih

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Ontology engineering., G Alterovitz, D P. Hill, J Lomax, C Mungall, M A. Harris, M E. Dolan, J A. Blake, and al et

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Measurement of replication structures at the nanometer scale using super-resolution light microscopy., D Baddeley, V O. Chagin, L Schermelleh, S Martin, A Pombo, P M. Carlton, A Gahl, P Domaing, U Birk, H Leonhardt, C Cremer, and M C. Cardoso

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Model based precision structural measurements on barely resolved objects., D Baddeley, Y Weiland, C Batram, U Birk, and C Cremer

Beta-endorphin mediates behavioral despair and the effect of ethanol on the tail suspension test in mice., E T. Barfield, S M. Barry, H B. Hodgin, B M. Thompson, S S. Allen, and J E. Grisel

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Quantitative analysis of fitness and genetic interactions in yeast on a genome scale., A Baryshnikova, M Costanzo, J Koh, K Toufighi, J Y. Youn, M Hibbs, D Hess, A C. Gingras, and al et

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Patterns of recombination activity on mouse chromosome 11 revealed by high resolution mapping., T Billings, E E. Sargent, J P. Szatkiewicz, N Leahy, I Y. Kwak, N Bektassova, M Walker, T Hassold, J H. Graber, K W. Broman, and P M. Petkov

Cdcs1 a major colitis susceptibility locus in mice; subcongenic analysis reveals genetic complexity., A Bleich, G Buchler, J P. Affourtit, B L. King, D J. Shaffer, D C. Roopenian, H J. Hedrich, J P. Sundberg, and E H. Leiter

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Male mice not alone in research., B Bolon, S W. Barthold, K L. Boyd, C Brayton, R D. Cardiff, L C. Cork, K A. Eaton, T R. Schoeb, J P. Sundberg, and J M. Ward

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New candidate genes identified for controlling mouse gonadal sex determination and the early stages of granulosa and Sertoli cell differentiation., G J. Bouma, Q J. Hudson, L L. Washburn, and E M. Eicher

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A missense mutation in a highly conserved alternate exon of dynamin-1 causes epilepsy in fitful mice., R M. Boumil, V A. Letts, M C. Roberts, C Lenz, C L. Mahaffey, Z W. Zhang, T Moser, and W N. Frankel

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Parameters for establishing humanized mouse models to study human immunity: analysis of human hematopoietic stem cell engraftment in three immunodeficient strains of mice bearing the IL2rgamma(null) mutation., M A. Brehm, A Cuthbert, C Yang, D M. Miller, P DiIorio, J Laning, L Burzenski, B Gott, O Foreman, A Kavirayani, M Herlihy, A A. Rossini, L D. Shultz, and D L. Greiner

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Human immune system development and rejection of human islet allografts in spontaneously diabetic NOD-Rag1null IL2rgammanull Ins2Akita mice., M A. Brehm, J Laning, A Cuthbert, C Yang, M Herlihy, L Burzenski, B Gott, O Foreman, A C. Powers, D L. Greiner, and L D. Shultz

Humanized mouse models to study human diseases., M A. Brehm, L D. Shultz, and D L. Greiner

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A mouse model of generalized non-Herlitz junctional epidermolysis bullosa., J A. Bubier, T J. Sproule, L M. Alley, C M. Webb, J D. Fine, D C. Roopenian, and J P. Sundberg

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Mutations of the opsin gene (Y102H and I307N) lead to light-induced degeneration of photoreceptors and constitutive activation of phototransduction in mice., E Budzynski, A K. Gross, S D. McAlear, M Edwards, J Won, W L. Hicks, T G. Wensel, J K. Naggert, and P M. Nishina

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The Mouse Genome Database: enhancements and updates., C J. Bult, J A. Kadin, J E. Richardson, J A. Blake, J T. Eppig, and Genome Database Mouse

Neuromuscular disease models and analysis., R W. Burgess, G A. Cox, and K L. Seburn

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Nephroblastoma overexpressed (Nov) inactivation sensitizes osteoblasts to bone morphogenetic protein-2, but nov is dispensable for skeletal homeostasis., E Canalis, Ramoya A. Smerdel, D Durant, A N. Economides, W G. Beamer, and S Zanotti

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Connective tissue growth factor is required for skeletal development and postnatal skeletal homeostasis in male mice., E Canalis, S Zanotti, W G. Beamer, A N. Economides, and Ramoya A. Smerdel

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Connective tissue growth factor is required for skeletal development and postnatal skeletal homeostasis in male mice., E Canalis, S Zanotti, W G. Beamer, A N. Economides, and Ramoya A. Smerdel

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Nerve terminal degeneration is independent of muscle fiber genotype in SOD1 mice., D I. Carrasco, E K. Bichler, K L. Seburn, and M J. Pinter

A systems-biology approach to modular genetic complexity., G W. Carter, C G. Rush, F Uygun, N A. Sakhanenko, D J. Galas, and T Galitski

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Segregation analysis of a sex ratio distortion locus in congenic mice., J Casellas, C R. Farber, R A. Verdugo, and J F. Medrano

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The mouse mutation "thrombocytopenia and cardiomyopathy" (trac) disrupts Abcg5: a spontaneous single gene model for human hereditary phytosterolemia/sitosterolemia., T H. Chase, B L. Lyons, R T. Bronson, O Foreman, L R. Donahue, L M. Burzenski, B Gott, P Lane, B Harris, K R. Johnson, and L D. Shultz

The importance of open-source integrative genomics to drug discovery., E J. Chesler and E J. Baker

Sub-cubic millimeter intraocular pressure monitoring implant to enable genetic studies on pressure-induced neurodegeneration., E Y. Chow, D Ha, T Y. Lin, W N. Devries, S W. John, W J. Chappell, and P P. Irazoqui

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A historical perspective on leptin., D L. Coleman

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Behavioral validation of the Ts65Dn mouse model for Down syndrome of a genetic background free of the retinal degeneration mutation Pde6b(rd1)., A C. Costa, M R. Stasko, C Schmidt, and M T. Davisson

Combining QTL data for HDL cholesterol levels from two different species leads to smaller confidence intervals., A Cox, S M. Sheehan, I Kloting, B Paigen, and R Korstanje

Occupational mouse allergen exposure among non-mouse handlers., Brosnan J. Curtin, B Paigen, K A. Hagberg, S Langley, E A. O'Neil, M Krevans, P A. Eggleston, and E C. Matsui

A novel spontaneous mutation of Irs1 in mice results in hyperinsulinemia, reduced growth, low bone mass and impaired adipogenesis., V E. DeMambro, M Kawai, T L. Clemens, K Fulzele, J A. Maynard, d e. Marin, K R. Johnson, E Canalis, W G. Beamer, C J. Rosen, and L R. Donahue

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Cancer genomes., E P. Diamandis, T Hudson, O Kallioniemi, E T. Liu, and Otin C. Lopez

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4Pi microscopy reveals an impaired three-dimensional mitochondrial network of pancreatic islet beta-cells, an experimental model of type-2 diabetes., A Dlaskova, T Spacek, J Santorova, Hlavata L. Plecita, Z Berkova, F Saudek, M Lessard, J Bewersdorf, and P Jezek

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JAX Colony Management System (JCMS): an extensible colony and phenotype data management system., C J. Donnelly, M McFarland, A Ames, B Sundberg, D Springer, P Blauth, and C J. Bult

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Invariant natural killer T-cell control of type 1 diabetes: a dendritic cell genetic decision of a silver bullet or Russian roulette., J P. Driver, F Scheuplein, Y G. Chen, A E. Grier, S B. Wilson, and D V. Serreze

Anti-CD4-targeted gold nanoparticles induce specific contrast enhancement of peripheral lymph nodes in X-ray computed tomography of live mice., W Eck, A I. Nicholson, H Zentgraf, W Semmler, and S Bartling

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Mutations in Lama1 disrupt retinal vascular development and inner limiting membrane formation., Malia M. Edwards, Elmina Mammadova-Bach, Fabien Alpy, Annick Klein, Wanda L. Hicks, Michel Roux, Patricia Simon-Assmann, Richard S. Smith, Gertraud Orend, Jiang Wu, Neal S. Peachey, Jurgen K. Naggert, Olivier Lefebvre, and Patsy M. Nishina

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Photoreceptor degeneration, azoospermia, leukoencephalopathy, and abnormal RPE cell function in mice expressing an early stop mutation in CLCN2., M M. Edwards, de Evsikova Marin, G B. Collin, E Gifford, J Wu, N Maphis, B T. Lamb, J K. Naggert, P M. Nishina, and N S. Peachey

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Preadipocyte factor-1 is associated with marrow adiposity and bone mineral density in women with anorexia nervosa., P K. Fazeli, M A. Bredella, M Misra, E Meenaghan, C J. Rosen, D R. Clemmons, A Breggia, K K. Miller, and A Klibanski

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Patent ductus arteriosus in mice with smooth muscle-specific Jag1 deletion., X Feng, L T. Krebs, and T Gridley

alpha- and beta-Adducin polymorphisms affect podocyte proteins and proteinuria in rodents and decline of renal function in human IgA nephropathy., M Ferrandi, D Cusi, I Molinari, F Macciardi, C Marcantoni, D Roccatello, L L. Peters, S Armelloni, and al et

Introduction to laboratory animal genetics., M F. Festing

Expression of the transcription factor, TFII-I, during post-implantation mouse embryonic development., I Fijalkowska, D Sharma, C J. Bult, and S K. Danoff

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Generation of a conditional null allele of NADPH oxidase activator 1 (NOXA1)., J P. Flaherty, C A. Spruce, H E. Fairfield, and D E. Bergstrom

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Is the filaggrin-histidine-urocanic acid pathway essential for stratum corneum acidification?, J W. Fluhr, P M. Elias, M Q. Man, M Hupe, C Selden, J P. Sundberg, E Tschachler, L Eckhart, T M. Mauro, and K R. Feingold

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Life extension by diet restriction and N-acetyl-L-cysteine in genetically heterogeneous mice., K Flurkey, C M. Astle, and D E. Harrison

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Reproductive ageing: Of worms and women., K Flurkey and D E. Harrison

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Altered metabolism and lipodystrophy in the early B-cell factor 1-deficient mouse., J A. Fretz, T Nelson, Y Xi, D J. Adams, C J. Rosen, and M C. Horowitz

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Loss of lysophosphatidylcholine acyltransferase 1 leads to photoreceptor degeneration in rd11 mice., J S. Friedman, B Chang, D S. Krauth, I Lopez, C Liu, S S. Bhattacharya, R K. Koenekoop, J R. Heckenlively, and al et

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The insulin-like growth factor-1 binding protein acid-labile subunit alters mesenchymal stromal cell fate., J C. Fritton, Y Kawashima, W Mejia, H W. Courtland, S Elis, Y Wu, C J. Rosen, D Clemmons, and S Yakar

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A novel null allele of mouse DSCAM survives to adulthood on an inbred C3H background with reduced phenotypic variability., P G. Fuerst, B S. Harris, K R. Johnson, and R W. Burgess

Integrating human and rodent data to identify the genetic factors involved in chronic kidney disease., M R. Garrett, M G. Pezzolesi, and R Korstanje

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Sex-specific gene expression in the BXD mouse liver., D M. Gatti, N Zhao, E J. Chesler, B U. Bradford, A A. Shabalin, R Yordanova, L Lu, and I Rusyn

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Visualization of omics data for systems biology., N Gehlenborg, S I. O'Donoghue, M A. Hibbs, H Kitano, O Kohlbacher, H Neuweger, and D Tenenbaum

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The Gene Ontology in 2010: extensions and refinements., Ontology Consortium Gene

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Molecular and phenotypic reassessment of an infrequently used mouse model for spinal muscular atrophy., R G. Gogliotti, S M. Hammond, C Lutz, and C J. Didonato

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Pyrosequencing enhancement for better detection limit and sequencing homopolymers., M Gong, S H. Foo, L Lin, E T. Liu, B Gharizadeh, and S Goel

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Nrk2b-mediated NAD+ production regulates cell adhesion and is required for muscle morphogenesis in vivo: Nrk2b and NAD+ in muscle morphogenesis., M F. Goody, M W. Kelly, K N. Lessard, A Khalil, and C A. Henry

In vivo selection of human embryonic stem cell-derived cells expressing methotrexate-resistant dihydrofolate reductase., J L. Gori, X Tian, D Swanson, R Gunther, L D. Shultz, R S. McIvor, and D S. Kaufman

Notch signaling in the vasculature., T Gridley

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Functional genomics complements quantitative genetics in identifying disease-gene associations., Y Guan, Bicknell C. Ackert, B Kell, O G. Troyanskaya, and M A. Hibbs

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High-fat diet leads to tissue-specific changes reflecting risk factors for diseases in DBA/2J mice., R S. Hageman, A Wagener, C Hantschel, K L. Svenson, G A. Churchill, and G A. Brockmann

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Genetics of mammalian meiosis: regulation, dynamics and impact on fertility., M A. Handel and J C. Schimenti

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Widespread genomic breaks generated by activation-induced cytidine deaminase are prevented by homologous recombination., M G. Hasham, N M. Donghia, E Coffey, J Maynard, K J. Snow, J Ames, R Y. Wilpan, Y He, B L. King, and K D. Mills

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The waved with open eyelids (woe) locus is a hypomorphic mouse mutation in Adam17., E L. Hassemer, Gall S. Le, R Liegel, M McNally, B Chang, C J. Zeiss, R D. Dubielzig, K Horiuchi, T Kimura, Y Okada, C P. Blobel, and D J. Sidjanin

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Representing ontogeny through ontology: a developmental biologist's guide to the gene ontology., D P. Hill, T Z. Berardini, D G. Howe, and Auken K. Van

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A MOD(ern) perspective on literature curation., J Hirschman, T Z. Berardini, H J. Drabkin, and D Howe

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ZFP191 is required by oligodendrocytes for CNS myelination., S Y. Howng, R L. Avila, B Emery, M Traka, W Lin, T Watkins, S Cook, R Bronson, M Davisson, B A. Barres, and B Popko

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Development of a mouse model for sporadic and metastatic colon tumors and its use in assessing drug treatment., K E. Hung, M A. Maricevich, L G. Richard, W Y. Chen, M P. Richardson, A Kunin, R T. Bronson, U Mahmood, and R Kucherlapati

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The de-ubiquitinase UCH-L1 is an oncogene that drives the development of lymphoma in vivo by deregulating PHLPP1 and Akt signaling., S Hussain, O Foreman, S L. Perkins, T E. Witzig, R R. Miles, Deursen J. van, and P J. Galardy

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CGDSNPdb: a database resource for error-checked and imputed mouse SNPs., L N. Hutchins, Y Ding, J P. Szatkiewicz, Smith R. Von, H Yang, Villena F. de, G A. Churchill, and J H. Graber

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An international bioinformatics infrastructure to underpin the Arabidopsis community., International Arabidopis Informatics Consortium

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Oncogenic activation of the Notch1 gene by deletion of its promoter in Ikaros-deficient T-ALL., R Jeannet, J Mastio, T Ashworth, J Ghysdael, T Gridley, T Honjo, S Chan, and al et

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Quantitative trait loci for tibial bone strength in C57BL/6J and C3H/HeJ inbred strains of mice., F Jiao, H Chiu, Y Jiao, Rijk W. de, X Li, E C. Eckstein, W G. Beamer, and W Gu

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Mesenchymal cell remodeling during mouse secondary palate reorientation., J Z. Jin, M Tan, D R. Warner, D S. Darling, Y Higashi, T Gridley, and J Ding

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Separate and combined effects of Sod1 and Cdh23 mutations on age-related hearing loss and cochlear pathology in C57BL/6J mice., K R. Johnson, H Yu, D Ding, H Jiang, L H. Gagnon, and R J. Salvi

Quantitative lymphatic vessel trait analysis suggests Vcam1 as candidate modifier gene of inflammatory bowel disease., G Jurisic, J P. Sundberg, A Bleich, E H. Leiter, K W. Broman, G Buechler, L Alley, D Vestweber, and M Detmar

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Novel sequence feature variant type analysis of the HLA genetic association in systemic sclerosis., D R. Karp, N Marthandan, S G. Marsh, C Ahn, A D. Diehl, M Feolo, G Thomson, M J. Waller, and al et

Retrospective study of spontaneous osteosarcomas in the nonobese diabetic strain and nonobese diabetic-derived substrains of mice., A M. Kavirayani and O Foreman

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Nocturnin: a circadian target of Pparg-induced adipogenesis., M Kawai, C B. Green, M Horowitz, Bicknell C. Ackert, Czernik B. Lecka, and C J. Rosen

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A circadian-regulated gene, Nocturnin, promotes adipogenesis by stimulating PPAR-gamma nuclear translocation., M Kawai, C B. Green, Czernik B. Lecka, N Douris, M R. Gilbert, S Kojima, Bicknell C. Ackert, N Garg, M C. Horowitz, M L. Adamo, D R. Clemmons, and C J. Rosen

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Bone: adiposity and bone accrual-still an established paradigm?, M Kawai and C J. Rosen

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The Archon Genomics X PRIZE for whole human genome sequencing., L Kedes and E T. Liu

Gene-specific RNA polymerase II phosphorylation and the CTD code., H Kim, B Erickson, W Luo, D Seward, J H. Graber, D D. Pollock, P C. Megee, and D L. Bentley

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Fine mapping in 94 inbred mouse strains using a high-density haplotype resource., A Kirby, H M. Kang, C M. Wade, C Cotsapas, E Y. Kang, M Rivas, M A. Bogue, K A. Frazer, and al et

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p53 controls radiation-induced gastrointestinal syndrome in mice independent of apoptosis., D G. Kirsch, P M. Santiago, Tomaso E. di, J M. Sullivan, O Takeuchi, S J. Korsmeyer, R T. Bronson, C F. Kim, K M. Haigis, R K. Jain, and al et

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Protein 4.2 binds to the carboxyl-terminal EF-hands of erythroid alpha-spectrin in a calcium- and calmodulin-dependent manner., C Korsgren, L L. Peters, and S E. Lux

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Notch1 activation in mice causes arteriovenous malformations phenocopied by ephrinB2 and EphB4 mutants., L T. Krebs, C Starling, A V. Chervonsky, and T Gridley

An Msh2 conditional knockout mouse for studying intestinal cancer and testing anticancer agents., M H. Kucherlapati, K Lee, A A. Nguyen, A B. Clark, M Lipkin, R T. Bronson, T A. Kunkel, R Kucherlapati, and al et

Identification of genetic determinants of IGF-1 levels and longevity among mouse inbred strains., M S. Leduc, R S. Hageman, Q Meng, R A. Verdugo, S W. Tsaih, G A. Churchill, B Paigen, and R Yuan

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A survey of airway responsiveness in 36 inbred mouse strains facilitates gene mapping studies and identification of quantitative trait loci., A S. Leme, A Berndt, L K. Williams, S W. Tsaih, J P. Szatkiewicz, R Verdugo, B Paigen, and S D. Shapiro

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Humanized nonobese diabetic-scid IL2rgammanull mice are susceptible to lethal Salmonella Typhi infection., S J. Libby, M A. Brehm, D L. Greiner, L D. Shultz, M McClelland, K D. Smith, L A. Cummings, and al et

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Epistasis contributes to the genetic buffering of plasma HDL cholesterol in mice., R H. Li and G A. Churchill

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Q&A: ChIP-seq technologies and the study of gene regulation., E T. Liu, S Pott, and M Huss

miR-22 functions as a micro-oncogene in transformed human bronchial epithelial cells induced by anti-benzo[a]pyrene-7,8-diol-9,10-epoxide., L Liu, Y Jiang, H Zhang, A R. Greenlee, R Yu, and Q Yang

Molecular basis for hair loss in mice carrying a novel nonsense mutation (Hrrh-R ) in the hairless gene (Hr)., Y Liu, J P. Sundberg, S Das, D Carpenter, K T. Cain, E J. Michaud, and B H. Voy

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Genetic dependence of central corneal thickness among inbred strains of mice., G D. Lively, B Jiang, Buenz A. Hedberg, B Chang, G E. Petersen, K Wang, M H. Kuehn, and M G. Anderson

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Critical reasoning on causal inference in genome-wide linkage and association studies., Y Li, B M. Tesson, G A. Churchill, and R C. Jansen

Multi-variant pathway association analysis reveals the importance of genetic determinants of estrogen metabolism in breast and endometrial cancer susceptibility., Y L. Low, Y Li, K Humphreys, A Thalamuthu, Y Li, H Darabi, S Wedren, C Bonnard, K Czene, M M. Iles, T Heikkinen, K Aittomaki, C Blomqvist, H Nevanlinna, P Hall, E T. Liu, and J Liu