Submissions from 2019
Elucidating cancer metabolic plasticity by coupling gene regulation with metabolic pathways., Dongya Jia, Mingyang Lu, Kwang Hwa Jung, Jun Hyoung Park, Linglin Yu, José N Onuchic, Benny Abraham Kaipparettu, and Herbert Levine
Estimating heritability and genetic correlations from large health datasets in the absence of genetic data., Gengjie Jia, Yu Li, Hanxin Zhang, Ishanu Chattopadhyay, Anders Boeck Jensen, David R Blair, Lea Davis, Peter N Robinson, Torsten Dahlén, Søren Brunak, Mikael Benson, Gustaf Edgren, Nancy J Cox, Xin Gao, and Andrey Rzhetsky
An effective biomedical document classification scheme in support of biocuration: addressing class imbalance., Xiangying Jiang, Martin Ringwald, Judith A. Blake, Cecilia Arighi, Gongbo Zhang, and Hagit Shatkay
Split selectable markers., Nathaniel L. Jillette, Menghan Du, Jacqueline Jufen Zhu, Peter Cardoz, and Albert W Cheng
Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis., Jethro Johnson, Daniel Spakowicz, Bo-Young Hong, Lauren M Petersen, Patrick Demkowicz, Lei Chen, Shana Leopold, Blake M Hanson, Hanako O Agresta, Mark Gerstein, Erica Sodergren, and George M. Weinstock
Genome-wide Analysis of Salmonella enterica serovar Typhi in Humanized Mice Reveals Key Virulence Features., Joyce E Karlinsey, Taylor A Stepien, Matthew Mayho, Larissa A Singletary, Lacey K Bingham-Ramos, Michael A Brehm, Dale L Greiner, Leonard D. Shultz, Larry A Gallagher, Matt Bawn, Robert A Kingsley, Stephen J Libby, and Ferric C Fang
Increased interactions and engulfment of dendrites by microglia precede Purkinje cell degeneration in a mouse model of Niemann Pick Type-C., Larisa Kavetsky, Kayla K Green, Bridget R Boyle, Fawad A K Yousufzai, Zachary M Padron, Sierra E Melli, Victoria L Kuhnel, Harriet M. Jackson, Rosa E Blanco, Gareth R Howell, and Ileana Soto
Gene loci associated with insulin secretion in islets from non-diabetic mice., Mark P Keller, Mary E Rabaglia, Kathryn L Schueler, Donnie S Stapleton, Daniel M Gatti, Matthew J Vincent, Kelly A Mitok, Ziyue Wang, Takanao Ishimura, Shane P Simonett, Christopher H Emfinger, Rahul Das, Tim Beck, Christina Kendziorski, Karl W Broman, Brian S Yandell, Gary A Churchill, and Alan D Attie
Genetic determinants of gut microbiota composition and bile acid profiles in mice., Julia H Kemis, Vanessa Linke, Kelsey L Barrett, Frederick J Boehm, Lindsay L Traeger, Mark P Keller, Mary E Rabaglia, Kathryn L Schueler, Donald S Stapleton, Daniel M Gatti, Gary A Churchill, Daniel Amador-Noguez, Jason D Russell, Brian S Yandell, Karl W Broman, Joshua J Coon, Alan D Attie, and Federico E Rey
Identification of a tumor-specific allo-HLA-restricted γδTCR., G J J Kierkels, W Scheper, A D Meringa, I Johanna, D X Beringer, A Janssen, M Schiffler, T Aarts-Riemens, L Kramer, T Straetemans, S Heijhuurs, J H W Leusen, E San José, K Fuchs, M Griffioen, J H Falkenburg, L Bongiovanni, A de Bruin, D Vargas-Diaz, M Altelaar, A J R Heck, Leonard D. Shultz, F Ishikawa, M I Nishimura, Z Sebestyén, and J Kuball
MIA-Sig: multiplex chromatin interaction analysis by signal processing and statistical algorithms., Minji Kim, Meizhen Zheng, Simon Zhongyuan Tian, Byoungkoo Lee, Jeffrey Chuang, and Yijun Ruan
Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources., Sebastian Köhler, Leigh Carmody, Nicole Vasilevsky, Julius O B Jacobsen, Daniel Danis, Jean-Philippe Gourdine, Michael Gargano, Nomi L Harris, Nicolas Matentzoglu, Julie A McMurry, David Osumi-Sutherland, Valentina Cipriani, James P Balhoff, Tom Conlin, Hannah Blau, Gareth Baynam, Richard Palmer, Dylan Gratian, Hugh Dawkins, Michael Segal, Anna C Jansen, Ahmed Muaz, Willie H Chang, Jenna Bergerson, Stanley J F Laulederkind, Zafer Yüksel, Sergi Beltran, Alexandra F Freeman, Panagiotis I Sergouniotis, Daniel Durkin, Andrea L Storm, Marc Hanauer, Michael Brudno, Susan M. Bello, Murat Sincan, Kayli Rageth, Matthew T Wheeler, Renske Oegema, Halima Lourghi, Maria G Della Rocca, Rachel Thompson, Francisco Castellanos, James Priest, Charlotte Cunningham-Rundles, Ayushi Hegde, Ruth C Lovering, Catherine Hajek, Annie Olry, Luigi Notarangelo, Morgan Similuk, Xingmin A Zhang, David Gómez-Andrés, Hanns Lochmüller, Hélène Dollfus, Sergio Rosenzweig, Shruti Marwaha, Ana Rath, Kathleen Sullivan, Cynthia Smith, Joshua D Milner, Dorothée Leroux, Cornelius F Boerkoel, Amy Klion, Melody C Carter, Tudor Groza, Damian Smedley, Melissa A Haendel, Chris Mungall, and Peter N Robinson
Encoding Clinical Data with the Human Phenotype Ontology for Computational Differential Diagnostics., Sebastian Köhler, N Christine Øien, Orion J Buske, Tudor Groza, Julius O B Jacobsen, Craig McNamara, Nicole Vasilevsky, Leigh Carmody, J P Gourdine, Michael Gargano, Julie A McMurry, Daniel Danis, Christopher J Mungall, Damian Smedley, Melissa Haendel, and Peter N Robinson
The JAX Synteny Browser for mouse-human comparative genomics., Georgi Kolishovski, Anna Lamoureux, Paul Hale, Joel E Richardson, Jill M. Recla, Omoluyi Adesanya, Allen K. Simons, Govindarajan Kunde-Ramamoorthy, and Carol J Bult
A mathematical model of combined CD8 T cell costimulation by 4-1BB (CD137) and OX40 (CD134) receptors., Anna Konstorum, Anthony T Vella, Adam J Adler, and Reinhard C Laubenbacher
The long noncoding RNA Morrbid regulates CD8 T cells in response to viral infection., Jonathan J Kotzin, Fany Iseka, Jasmine Wright, Megha G Basavappa, Megan L Clark, Mohammed-Alkhatim Ali, Mohamed S Abdel-Hakeem, Tanner F Robertson, Walter K Mowel, Leonel Joannas, Vanessa D Neal, Sean P Spencer, Camille M Syrett, Montserrat C Anguera, Adam Williams, E John Wherry, and Jorge Henao-Mejia
Editorial: Long Non-coding RNAs and Immunity., Grace J Kwon, Jorge Henao-Mejia, and Adam Williams
Multiomic Profiling Identifies cis-Regulatory Networks Underlying Human Pancreatic β Cell Identity and Function., Nathan Lawlor, Eladio J Marquez, Peter Orchard, Narisu Narisu, Muhammad Saad Shamim, Asa Thibodeau, Arushi Varshney, Romy Kursawe, Michael R Erdos, Matt Kanke, Huiya Gu, Evgenia Pak, Amalia Dutra, Sheikh Russell, Xingwang Li, Emaly Piecuch, Oscar Junhong Luo, Peter S Chines, Christian Fuchbserger, NIH Intramural Sequencing Center, Praveen Sethupathy, Aviva Presser Aiden, Yijun Ruan, Erez Lieberman Aiden, Francis S Collins, Duygu Ucar, Stephen C J Parker, and Michael L. Stitzel
(Epi)genomic heterogeneity of pancreatic islet function and failure in type 2 diabetes., Nathan Lawlor and Michael L. Stitzel
Opinion: Greater diversity is needed in human genomic data., Charles Lee
The Firre locus produces a trans-acting RNA molecule that functions in hematopoiesis., Jordan P Lewandowski, James C Lee, Taeyoung Hwang, Hongjae Sunwoo, Jill M Goldstein, Abigail F Groff, Nydia P Chang, William Mallard, Adam Williams, Jorge Henao-Meija, Richard A Flavell, Jeannie T Lee, Chiara Gerhardinger, Amy J Wagers, and John L Rinn
Structure and function of the immune system in the spleen., Steven M Lewis, Adam Williams, and Stephanie C Eisenbarth
Oral Microbiome in HIV-Infected Women: Shifts in the Abundance of Pathogenic and Beneficial Bacteria Are Associated with Aging, HIV Load, CD4 Count, and Antiretroviral Therapy., Tyler Lewy, Bo-Young Hong, Barbara Weiser, Harold Burger, Andrew Tremain, George M. Weinstock, Kathryn Anastos, and Michael D George
Single cell transcriptomics based-MacSpectrum reveals novel macrophage activation signatures in diseases., Chuan Li, Antoine Menoret, Cullen Farragher, Zhengqing Ouyang, Christopher Bonin, Paul Holvoet, Anthony T Vella, and Beiyan Zhou
Comparative analysis of metabolome of rice seeds at three developmental stages using a recombinant inbred line population., Kang Li, Dehong Wang, Liang Gong, Yuanyuan Lyu, Hao Guo, Wei Chen, Cheng Jin, Xianqing Liu, Chuanying Fang, and Jie Luo
Development and validation of a novel 29-plex Y-STR typing system for forensic application., Min Li, Wei Zhou, Yilun Zhang, Lei Huang, Xinjie Wang, Jun Wu, Meng Meng, Hongran Wang, Chengtao Li, and Yingnan Bian
PRAS: Predicting functional targets of RNA binding proteins based on CLIP-seq peaks., Jianan Lin, Yuping Zhang, Wayne N Frankel, and Zhengqing Ouyang
Complex Microbiome in Brain Abscess Revealed by Whole-Genome Culture-Independent and Culture-Based Sequencing., Jyun-Hong Lin, Zong-Yen Wu, Liang Gong, Chee-Hong Wong, Wen-Cheng Chao, Chun-Ming Yen, Ching-Ping Wang, Chia-Lin Wei, Yao-Ting Huang, and Po-Yu Liu
Nail abnormalities identified in an ageing study of 30 inbred mouse strains., Sarah C Linn, Allison M Mustonen, Kathleen A Silva, Victoria E. Kennedy, Beth A. Sundberg, Lesley S Bechtold, Sarah Alghamdi, Robert Hoehndorf, Paul N Schofield, and John P Sundberg
Mesenchymal stem cells: From regeneration to cancer., Peishan Li, Zheng Gong, Leonard D. Shultz, and Guangwen Ren
Inhibition of Tissue-Nonspecific Alkaline Phosphatase Attenuates Ectopic Mineralization in the Abcc6, Qiaoli Li, Jianhe Huang, Anthony B Pinkerton, Jose Luis Millan, Bertrand D van Zelst, Michael A Levine, John P Sundberg, and Jouni Uitto
Quantitative Trait Locus and Integrative Genomics Revealed Candidate Modifier Genes for Ectopic Mineralization in Mouse Models of Pseudoxanthoma Elasticum., Qiaoli Li, Vivek M. Philip, Timothy M Stearns, Jason A. Bubier, Benjamin L King, Benjamin E. Low, Michael V. Wiles, Amir Hossein Saeidian, Beth A. Sundberg, Jouni Uitto, and John P Sundberg
IL-10-Dependent Crosstalk between Murine Marginal Zone B Cells, Macrophages, and CD8α, Dong Liu, Xiangyun Yin, Sam J Olyha, Manuela Sales L Nascimento, Pei Chen, Theresa White, Uthaman Gowthaman, Tingting Zhang, Jake A Gertie, Biyan Zhang, Lan Xu, Marina Yurieva, Lesley Devine, Adam Williams, and Stephanie C Eisenbarth
Tumor Origins Through Genomic Profiles., Edison Liu and Susan M Mockus
N-terminal alternative splicing of GluN1 regulates the maturation of excitatory synapses and seizure susceptibility., Hong Liu, Haoyi Wang, Matthew Peterson, Wen Zhang, Guoqiang Hou, and Zhong-Wei Zhang
Sequentially inducible mouse models reveal that Npm1 mutation causes malignant transformation of Dnmt3a-mutant clonal hematopoiesis., Matthew A Loberg, Rebecca K Bell, Leslie Goodwin, Elizabeth Eudy, Linde A Miles, Jennifer M SanMiguel, Kira Young, David E. Bergstrom, Ross L Levine, Rebekka K Schneider, and Jennifer J. Trowbridge
Genomic inversions and GOLGA core duplicons underlie disease instability at the 15q25 locus., Flavia A M Maggiolini, Stuart Cantsilieris, Pietro D'Addabbo, Michele Manganelli, Bradley P Coe, Beth L Dumont, Ashley D Sanders, Andy Wing Chun Pang, Mitchell R Vollger, Orazio Palumbo, Pietro Palumbo, Maria Accadia, Massimo Carella, Evan E Eichler, and Francesca Antonacci
Effects of diet on the childhood gut microbiome and its implications for atopic dermatitis., Mahboobeh Mahdavinia, Heather E Rasmussen, Maresa Botha, Thi Dong Binh Tran, Jolice P Van den Berg, Erica Sodergren Weinstock, Erika Davis, Krista Engen, Claudia Gray, Nonhlanhla Lunjani, Carol Hlela, Nailliw Z Preite, Wisdom Basera, Lelani Hobane, Alexandra Watkins, Phillip Engen, Avumile Mankahla, Ben Gaunt, Facey Thomas, Mary C Tobin, Alan Landay, George M. Weinstock, Ali Keshavarzian, and Michael E Levin
Factors that influence response classifications in chemotherapy treated patient-derived xenografts (PDX)., Joan Malcolm, Timothy M Stearns, Susan Airhart, Joel H. Graber, and Carol J Bult
Genomic Medicine Year in Review: 2019., Teri A Manolio, Carol J Bult, Rex L Chisholm, Patricia A Deverka, Geoffrey S Ginsburg, Gail P Jarvik, Howard L McLeod, George A Mensah, Mary V Relling, Dan M Roden, Robb Rowley, Cecelia Tamburro, Marc S Williams, and Eric D Green
Opportunities, resources, and techniques for implementing genomics in clinical care., Teri A Manolio, Robb Rowley, Marc S Williams, Dan Roden, Geoffrey S Ginsburg, Carol J Bult, Rex L Chisholm, Patricia A Deverka, Howard L McLeod, George A Mensah, Mary V Relling, Laura Lyman Rodriguez, Cecelia Tamburro, and Eric D Green
A Mobile Prenatal Care App to Reduce In-Person Visits: Prospective Controlled Trial., Kathryn I Marko, Nihar Ganju, Jill M Krapf, Nancy D Gaba, James A Brown, Joshua J Benham, Julia Oh, Lorna M Richards, and Andrew C Meltzer
Germline Maintenance Through the Multifaceted Activities of GLH/Vasa in, Elisabeth A Marnik, J Heath Fuqua, Catherine S Sharp, Jesse D Rochester, Emily L Xu, Sarah E Holbrook, and Dustin L Updike
Interplay between dendritic cells and cancer cells., Jan Martinek, Te-Chia Wu, Diana Cadena, Jacques Banchereau, and Karolina Palucka
Human NK cell development in hIL-7 and hIL-15 knockin NOD/SCID/IL2rgKO mice., Masashi Matsuda, Rintaro Ono, Tomonori Iyoda, Takaho Endo, Makoto Iwasaki, Mariko Tomizawa-Murasawa, Yoriko Saito, Akiko Kaneko, Kanako Shimizu, Daisuke Yamada, Narumi Ogonuki, Takashi Watanabe, Manabu Nakayama, Yoko Koseki, Fuyuko Kezuka-Shiotani, Takanori Hasegawa, Hiromasa Yabe, Shunichi Kato, Atsuo Ogura, Leonard D. Shultz, Osamu Ohara, Masaru Taniguchi, Haruhiko Koseki, Shin-Ichiro Fujii, and Fumihiko Ishikawa
Mouse genome-wide association and systems genetics identifies Lhfp as a regulator of bone mass., Larry D Mesner, Gina M Calabrese, Basel Al-Barghouthi, Daniel M. Gatti, John P Sundberg, Gary A Churchill, Dana A Godfrey, Cheryl L Ackert-Bicknell, and Charles R Farber
Single-cell transcriptomic analysis of the lateral hypothalamic area reveals molecularly distinct populations of inhibitory and excitatory neurons., Laura E Mickelsen, Mohan Bolisetty, Brock R Chimileski, Akie Fujita, Eric J Beltrami, James T Costanzo, Jacob R Naparstek, Paul Robson, and Alexander C Jackson
Histone methyltransferase PRDM9 is not essential for meiosis in male mice., Ondrej Mihola, Florencia Pratto, Kevin Brick, Eliska Linhartova, Tatyana Kobets, Petr Flachs, Christopher L. Baker, Radislav Sedlacek, Kenneth Paigen, Petko M. Petkov, R Daniel Camerini-Otero, and Zdenek Trachtulec
Glycine supplementation extends lifespan of male and female mice., Richard A Miller, David E Harrison, Clinton Michael Astle, Molly A. Bogue, Joel Brind, Elizabeth Fernandez, Kevin Flurkey, Martin Javors, Warren Ladiges, Christiaan Leeuwenburgh, Francesca Macchiarini, James Nelson, Alexey G Ryazanov, Jessica Snyder, Timothy M Stearns, Douglas E Vaughan, and Randy Strong
Multiplexed detection of proteins, transcriptomes, clonotypes and CRISPR perturbations in single cells., Eleni P Mimitou, Anthony Cheng, Antonino Montalbano, Stephanie Hao, Marlon Stoeckius, Mateusz Legut, Timothy Roush, Alberto Herrera, Efthymia Papalexi, Zhengqing Ouyang, Rahul Satija, Neville E Sanjana, Sergei B Koralov, and Peter Smibert
The Role of Emotional Contagion in the Distress Exhibited by Grouped Mice Exposed to CO₂., Andrea D Moffitt, Laurie L Brignolo, Amir Ardeshir, and Michelle A Creamer-Hente
Allele-specific RNA interference prevents neuropathy in Charcot-Marie-Tooth disease type 2D mouse models., Kathryn H Morelli, Laurie B Griffin, Nettie K Pyne, Lindsay M Wallace, Allison M Fowler, Stephanie N Oprescu, Ryuichi Takase, Na Wei, Rebecca Meyer-Schuman, Dattatreya Mellacheruvu, Jacob O Kitzman, Samuel G Kocen, Timothy J Hines, Emily L Spaulding, James R Lupski, Alexey Nesvizhskii, Pedro Mancias, Ian J Butler, Xiang-Lei Yang, Ya-Ming Hou, Anthony Antonellis, Scott Q Harper, and Robert W. Burgess
Genetic variation in thyroid folliculogenesis influences susceptibility to hypothyroidism-induced hearing impairment., Amanda H Mortensen, Qing Fang, Michelle T Fleming, Thomas J Jones, Alexandre Z Daly, Kenneth R. Johnson, and Sally A Camper
Meeting report: 32nd international mammalian genome conference., Jacob Moskowitz, Lauren Tracey, Samuel Widmayer, and Beth L Dumont
Identifying and ranking potential driver genes of Alzheimer's disease using multiview evidence aggregation., Sumit Mukherjee, Thanneer M Perumal, Kenneth Daily, Solveig K Sieberts, Larsson Omberg, Christoph Preuss, Gregory W. Carter, Lara M Mangravite, and Benjamin A Logsdon
Identification of a Functional Non-coding Variant in the GABA, Megan K Mulligan, Timothy Abreo, Sarah M Neuner, Cory Parks, Christine E Watkins, M Trevor Houseal, Thomas M Shapaker, Michael Hook, Haiyan Tan, Xusheng Wang, Jesse Ingels, Junmin Peng, Lu Lu, Catherine Kaczorowski, Camron D Bryant, Gregg E Homanics, and Robert W Williams
Genomic architecture of Shh-dependent cochlear morphogenesis., Victor Muthu, Alex M Rohacek, Yao Yao, Staci M Rakowiecki, Alexander S Brown, Ying-Tao Zhao, James Meyers, Kyoung-Jae Won, Shweta Ramdas, Christopher D Brown, Kevin A Peterson, and Douglas J Epstein
The Gp1ba-Cre transgenic mouse: a new model to delineate platelet and leukocyte functions., Zoltan Nagy, Timo Vögtle, Mitchell J Geer, Jun Mori, Silke Heising, Giada Di Nunzio, Ralph Gareus, Alexander Tarakhovsky, Arthur Weiss, Benjamin G Neel, Guillaume E Desanti, Alexandra Mazharian, and Yotis A Senis
TeXP: Deconvolving the effects of pervasive and autonomous transcription of transposable elements., Fabio Cp Navarro, Jacob Hoops, Lauren Bellfy, Eliza Cerveira, Qihui Zhu, Chengsheng Zhang, Charles Lee, and Mark B Gerstein
Enabling Global Clinical Collaborations on Identifiable Patient Data: The Minerva Initiative., Christoffer Nellåker, Fowzan S Alkuraya, Gareth Baynam, Raphael A Bernier, Francois P J Bernier, Vanessa Boulanger, Michael Brudno, Han G Brunner, Jill Clayton-Smith, Benjamin Cogné, Hugh J S Dawkins, Bert B A deVries, Sofia Douzgou, Tracy Dudding-Byth, Evan E Eichler, Michael Ferlaino, Karen Fieggen, Helen V Firth, David R FitzPatrick, Dylan Gration, Tudor Groza, Melissa Haendel, Nina Hallowell, Ada Hamosh, Jayne Hehir-Kwa, Marc-Phillip Hitz, Mark Hughes, Usha Kini, Tjitske Kleefstra, R Frank Kooy, Peter Krawitz, Sébastien Küry, Melissa Lees, Gholson J Lyon, Stanislas Lyonnet, Julien L Marcadier, Stephen Meyn, Veronika Moslerová, Juan M Politei, Cathryn C Poulton, F Lucy Raymond, Margot R F Reijnders, Peter N Robinson, Corrado Romano, Catherine M Rose, David C G Sainsbury, Lyn Schofield, Vernon R Sutton, Marek Turnovec, Anke Van Dijck, Hilde Van Esch, and Andrew O M Wilkie
Knockdown of heterochromatin protein 1 binding protein 3 recapitulates phenotypic, cellular, and molecular features of aging., Sarah M Neuner, Shengyuan Ding, and Catherine C Kaczorowski
Harnessing Genetic Complexity to Enhance Translatability of Alzheimer's Disease Mouse Models: A Path toward Precision Medicine., Sarah M Neuner, Sarah E Heuer, Matthew J Huentelman, Kristen M S O'Connell, and Catherine C Kaczorowski
Identification of Pre-symptomatic Gene Signatures That Predict Resilience to Cognitive Decline in the Genetically Diverse AD-BXD Model., Sarah M Neuner, Sarah E Heuer, Ji-Gang Zhang, Vivek M. Philip, and Catherine Kaczorowski
Compassion Fatigue, Euthanasia Stress, and Their Management in Laboratory Animal Research., Joseph T Newsome, Elizabeth A Clemmons, Dawn C Fitzhugh, Tracy L Gluckman, Michelle A Creamer-Hente, Laura J Tambrallo, and Temeri Wilder-Kofie
Cellular senescence in progenitor cells contributes to diminished remyelination potential in progressive multiple sclerosis., Alexandra M Nicaise, Laura J Wagstaff, Cory M Willis, Carolyn Paisie, Harshpreet Chandok, Paul Robson, Valentina Fossati, Anna Williams, and Stephen J Crocker
Antibiotic collateral sensitivity is contingent on the repeatability of evolution., Daniel Nichol, Joseph Rutter, Christopher Bryant, Andrea M Hujer, Sai Lek, Mark D Adams, Peter Jeavons, Alexander R A Anderson, Robert A Bonomo, and Jacob G Scott
Hybrid Sterility with Meiotic Metaphase Arrest in Intersubspecific Mouse Crosses., Risako Nishino, Sabrina Petri, Mary Ann Handel, Tetsuo Kunieda, and Yasuhiro Fujiwara
Altered In Vivo Lipid Fluxes and Cell Dynamics in Subcutaneous Adipose Tissues Are Associated With the Unfavorable Pattern of Fat Distribution in Obese Adolescent Girls., Jessica Nouws, Mark Fitch, Mariana Mata, Nicola Santoro, Brittany Galuppo, Romy Kursawe, Deepak Narayan, Alla Vash-Margita, Bridget Pierpont, Gerald I Shulman, Marc Hellerstein, and Sonia Caprio
Genetic background modifies CNS-mediated sensorimotor decline in the AD-BXD mouse model of genetic diversity in Alzheimer's disease., Kristen M S O'Connell, Andrew R Ouellette, Sarah M Neuner, Amy R Dunn, and Catherine Kaczorowski
Generation of Hematopoietic Stem and Progenitor Cells from Human Pluripotent Stem Cells., Hideyuki Oguro
The Roles of Cholesterol and Its Metabolites in Normal and Malignant Hematopoiesis., Hideyuki Oguro
Immune cells for microbiota surveillance., Julia Oh and Derya Unutmaz
Hepsin-mediated Processing of Uromodulin is Crucial for Salt-sensitivity and Thick Ascending Limb Homeostasis., Eric Olinger, Jennifer Lake, Susan Sheehan, Guglielmo Schiano, Tomoaki Takata, Natsuko Tokonami, Huguette Debaix, Francesco Consolato, Luca Rampoldi, Ron Korstanje, and Olivier Devuyst
Co-activation of macrophages and T cells contribute to chronic GVHD in human IL-6 transgenic humanised mouse model., Rintaro Ono, Takashi Watanabe, Eiryo Kawakami, Makoto Iwasaki, Mariko Tomizawa-Murasawa, Masashi Matsuda, Yuho Najima, Shinsuke Takagi, Saera Fujiki, Rumi Sato, Yoshiki Mochizuki, Hisahiro Yoshida, Kaoru Sato, Hiromasa Yabe, Shunichi Kato, Yoriko Saito, Shuichi Taniguchi, Leonard D. Shultz, Osamu Ohara, Masayuki Amagai, Haruhiko Koseki, and Fumihiko Ishikawa
Enhancing face validity of mouse models of Alzheimer's disease with natural genetic variation., Kristen D. Onos, Asli Uyar, Kelly J Keezer, Harriet M. Jackson, Christoph Preuss, Casey Acklin, Rita O'Rourke, Rebecca A Buchanan, Travis L Cossette, Stacey J Sukoff Rizzo, Ileana Soto, Gregory W. Carter, and Gareth R Howell
Genetic perturbations of disease risk genes in mice capture transcriptomic signatures of late-onset Alzheimer's disease., Ravi S Pandey, Leah C. Graham, Asli Uyar, Christoph Preuss, Gareth R Howell, and Gregory W. Carter
Differential Functions of Splicing Factors in Mammary Transformation and Breast Cancer Metastasis., SungHee Park, Mattia Brugiolo, Martin Akerman, Shipra Das, Laura M Urbanski, Adam Geier, Anil K Kesarwani, Martin Fan, Nathan Leclair, Kuan-Ting Lin, Leo Hu, Ian Hua, Joshy George, Senthil K Muthuswamy, Adrian R Krainer, and Olga Anczuków
Utility of the JAX Clinical Knowledgebase in capture and assessment of complex genomic cancer data., Sara E. Patterson, Cara M. Statz, Taofei Yin, and Susan Mockus
Towards large scale automated cage monitoring - Diurnal rhythm and impact of interventions on in-cage activity of C57BL/6J mice recorded 24/7 with a non-disrupting capacitive-based technique., Karin Pernold, F Iannello, Benjamin E. Low, M Rigamonti, G Rosati, F Scavizzi, J Wang, M Raspa, Michael V. Wiles, and B Ulfhake
Perceived Gaps in Genetics Training Among Audiologists and Speech-Language Pathologists: Lessons From a National Survey., Beate Peter, Michael J Dougherty, E Kate Reed, Emily A Edelman, and Karen Hanson
On Finding and Enumerating Maximal and Maximum k-Partite Cliques in k-Partite Graphs, Charles A. Phillips, Kai Wang, Erich J. Baker, Jason A. Bubier, Elissa J Chesler, and Michael A. Langston
Connecting the molecular function of microRNAs to cell differentiation dynamics., Russell Posner and Reinhard Laubenbacher
Delivery of CRISPR-Cas9 into Mouse Zygotes by Electroporation., Wenning Qin and Haoyi Wang
Acetate Promotes T Cell Effector Function during Glucose Restriction., Jing Qiu, Matteo Villa, David E Sanin, Michael D Buck, David O'Sullivan, Reagan Ching, Mai Matsushita, Katarzyna M Grzes, Frances Winkler, Chih-Hao Chang, Jonathan D Curtis, Ryan L Kyle, Nikki Van Teijlingen Bakker, Mauro Corrado, Fabian Haessler, Francesca Alfei, Joy Edwards-Hicks, Leonard B Maggi, Dietmar Zehn, Takeshi Egawa, Bertram Bengsch, Ramon I Klein Geltink, Thomas Jenuwein, Edward J Pearce, and Erika L Pearce
Functional interrogation of Lynch syndrome-associated MSH2 missense variants via CRISPR-Cas9 gene editing in human embryonic stem cells., Abhijit Rath, Akriti Mishra, Victoria Duque Ferreira, Chaoran Hu, Gregory Omerza, Kevin Kelly, Andrew N Hesse, Honey V Reddi, James P Grady, and Christopher D Heinen
Genetic mapping in Diversity Outbred mice identifies a Trpa1 variant influencing late-phase formalin response., Jill M. Recla, Jason A. Bubier, Daniel M Gatti, Jennifer L Ryan, Katie H Long, Raymond F. Robledo, Nicole C Glidden, Guoqiang Hou, Gary Churchill, Richard S. Maser, Zhong-Wei Zhang, Erin E Young, Elissa J Chesler, and Carol J Bult
Three things every nurse practitioner can do to integrate genetics into practice., E Kate Reed, Therese Ingram, and Emily A Edelman
Somatic Testing: Implications for Targeted Treatment., E Kate Reed, Linda Steinmark, Diane C Seibert, and Emily A Edelman
The Alliance of Genome Resources: Building a Modern Data Ecosystem for Model Organism Databases., Alliance of Genome Resources Consortium, Carol J Bult, Judith A. Blake, Brian R Calvi, J. Michael Cherry, Valentina DiFrancesco, Robert Fullem, Kevin L Howe, Thom Kaufman, Chris Mungall, Norbert Perrimon, Mary Shimoyama, Paul W Sternberg, Paul Thomas, and Monte Westerfield
Linked-read Sequencing Analysis Reveals Tumor-specific Genome Variation Landscapes in Neurofibromatosis Type 2 (NF2) Patients., Daniel S Roberts, Rahul Maurya, Yuka Takemon, Jeremie Vitte, Liang Gong, Juanjuan Zhao, Chee-Hong Wong, William Slattery, Kevin A Peng, Gregory Lekovic, Marc S Schwartz, Ketan Bulsara, Chew Yee Ngan, Marco Giovannini, and Chia-Lin Wei
Activin type II receptor signaling in cardiac aging and heart failure., Jason D Roh, Ryan Hobson, Vinita Chaudhari, Pablo Quintero, Ashish Yeri, Mark Benson, Chunyang Xiao, Daniel Zlotoff, Vassilios Bezzerides, Nicholas Houstis, Colin Platt, Federico Damilano, Brian R Lindman, Sammy Elmariah, Michael Biersmith, Se-Jin Lee, Christine E Seidman, Jonathan G Seidman, Robert E Gerszten, Estelle Lach-Trifilieff, David J Glass, and Anthony Rosenzweig
The RNA-binding protein DND1 acts sequentially as a negative regulator of pluripotency and a positive regulator of epigenetic modifiers required for germ cell reprogramming., Victor A Ruthig, Matthew B Friedersdorf, Jason A Garness, Steven C. Munger, Corey Bunce, Jack D Keene, and Blanche Capel
BMP signaling mediates glioma stem cell quiescence and confers treatment resistance in glioblastoma., Rohit Sachdeva, Megan Wu, Kevin C Johnson, Hyunsoo Kim, Angela Celebre, Uswa Shahzad, Maya Srikanth Graham, John A Kessler, Jeffrey Chuang, Jason Karamchandani, Markus Bredel, Roel G W Verhaak, and Sunit Das
Spatial chromatin architecture alteration by structural variations in human genomes at the population scale., Michal Sadowski, Agnieszka Kraft, Przemyslaw Szalaj, Michal Wlasnowolski, Zhonghui Tang, Yijun Ruan, and Dariusz Plewczynski
MSC: a metagenomic sequence classification algorithm., Subrata Saha, Jethro Johnson, Soumitra Pal, George M. Weinstock, and Sanguthevar Rajasekaran
Identification of Genomic and Molecular Traits that Present Therapeutic Vulnerability to HGF-targeted therapy in Glioblastoma., Jason K Sa, Sung Heon Kim, Jin-Ku Lee, Hee Jin Cho, Yong Jae Shin, Hyemi Shin, Harim Koo, Donggeon Kim, Mijeong Lee, Wonyoung Kang, Sung Hee Hong, Jung Yong Kim, Young-Whan Park, Seong-Won Song, Song-Jae Lee, Kyeung Min Joo, and Do-Hyun Nam
Variable outcomes of human heart attack recapitulated in genetically diverse mice., Ekaterina Salimova, Kristen J Nowak, Ana C Estrada, Milena B Furtado, Elyshia McNamara, Quang Nguyen, Lois Balmer, Christoph Preuss, Jeffrey W Holmes, Mirana Ramialison, Grant Morahan, and Nadia Rosenthal
CD11c+ Cells Are Gatekeepers for Lymphocyte Trafficking to Infiltrated Islets During Type 1 Diabetes., Adam M Sandor, Robin S Lindsay, Nathan Dyjack, Jennifer C Whitesell, Cydney Rios, Brenda J Bradley, Kathryn Haskins, David V. Serreze, Aron M Geurts, Yi-Guang Chen, Max A Seibold, Jordan Jacobelli, and Rachel S Friedman
Family health history and genetic services-the East Baltimore community stakeholder interview project., Kunal Sanghavi, Ivy Moses, DuWade Moses, Adelaide Gordon, Linda Chyr, and Joann Bodurtha
Cardiac phenotype in mouse models of systemic autoimmunity., Chandan Sanghera, Lok Man Wong, Mona Panahi, Amalia Sintou, Muneer G. Hasham, and Susanne Sattler