Content Posted in 2023
3D-bioprinting of patient-derived cardiac tissue models for studying congenital heart disease., Jayne T Wolfe, Wei He, Min-Su Kim, Huan-Ling Liang, Akankshya Shradhanjali, Hilda Jurkiewicz, Bonnie P Freudinger, Andrew S Greene, John F LaDisa, Lobat Tayebi, Michael E Mitchell, Aoy Tomita-Mitchell, and Brandon J Tefft
3D-Epigenomic Regulation of Gene Transcription in Hepatocellular Carcinoma., Yuliang Feng, Ping Wang, Liuyang Cai, Meixiao Zhan, Fan He, Jiahui Wang, Yong Li, Eva Gega, Wei Zhang, Wei Zhao, Yongjie Xin, Xudong Chen, Yijun Ruan, and Ligong Lu
ACDA: implementation of an augmented drug synergy prediction algorithm., Sergii Domanskyi, Emily L Jocoy, Anuj Srivastava, and Carol J Bult
A comparison of DNA sequencing and gene expression profiling to assist tissue of origin diagnosis in cancer of unknown primary., Atara Posner, Owen Wj Prall, Tharani Sivakumaran, Dariush Etemadamoghadam, Niko Thio, Andrew Pattison, Shiva Balachander, Krista Fisher, Samantha Webb, Colin Wood, Anna DeFazio, Nicholas Wilcken, Bo Gao, Christos S Karapetis, Madhu Singh, Ian M Collins, Gary Richardson, Christopher Steer, Mark Warren, Narayan Karanth, Gavin Wright, Scott Williams, Joshy George, Rodney J Hicks, Alex Boussioutas, Anthony J Gill, Benjamin J Solomon, Huiling Xu, Andrew Fellowes, Stephen B Fox, Penelope Schofield, David Bowtell, Linda Mileshkin, and Richard W Tothill
Acute Myeloid Leukemia Causes T Cell Exhaustion and Depletion in a Humanized Graft-versus-Leukemia Model., Bei Jia, Chenchen Zhao, Kentaro Minagawa, Hiroko Shike, David F Claxton, W Christopher Ehmann, Witold B Rybka, Shin Mineishi, Ming Wang, Todd D Schell, K Sandeep Prabhu, Robert F Paulson, Yi Zhang, Leonard D. Shultz, and Hong Zheng
Adaptive Sentinel Testing in Workplace for COVID-19 Pandemic., Yi Li, Mandy Chen, Joshy George, Edison Liu, and Radha Krishna Murthy Karuturi
A data-driven optimization method for coarse-graining gene regulatory networks., Cristian Caranica and Mingyang Lu
Adding gene transcripts into genomic prediction improves accuracy and reveals sampling time dependence., Bruno C Perez, Marco C A M Bink, Karen L. Svenson, Gary Churchill, and Mario P L Calus
A developmental approach to diversifying neuroscience through effective mentorship practices: perspectives on cross-identity mentorship and a critical call to action., Tanisha G Hill-Jarrett, Rowena Ng, Carlos Cardenas-Iniguez, Jemima Akinsanya, Ismary Blanco, Johnathan M Borland, James S Brown, Tameka Clemons, Adriana K Cushnie, Jacqueline Garcia, Brianna George, Cera W Hassinan, Timothy J Hines, Dan Landayan, Taylor A McCorkle, Katherine R Meckel, Mariajose Metcalfe, Samantha A Montoya, Deborah K Rose, and Desmond R Warren
A Dpagt1 Missense Variant Causes Degenerative Retinopathy without Myasthenic Syndrome in Mice, Lillian F Hyde, Yang Kong, Lihong Zhao, Sriganesh Ramachandra Rao, Jieping Wang, Lisa Stone, Andrew Njaa, Gayle B. Collin, Mark P. Krebs, Bo Chang, Steven J Fliesler, Patsy M. Nishina, and Juergen K. Naggert
Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP)., Sanjay Jain, Liming Pei, Jeffrey M Spraggins, Michael Angelo, James P Carson, Nils Gehlenborg, Fiona Ginty, Joana P Gonçalves, James S Hagood, John W Hickey, Neil L Kelleher, Louise C Laurent, Shin Lin, Yiing Lin, Huiping Liu, Alexandra Naba, Ernesto S Nakayasu, Wei-Jun Qian, Andrea Radtke, Paul Robson, Brent R Stockwell, Raf Van de Plas, Ioannis S Vlachos, Mowei Zhou, Katy Börner, and Michael P Snyder
Advances in Animal Models and Cutting-Edge Research in Alternatives: Proceedings of the Third International Conference on 3Rs Research and Progress, Vishakhapatnam, 2022., Nikita Narayan Naik, Bharadwaja Vadloori, Suresh Poosala, Pratima Srivastava, Sandra Coecke, Adrian Smith, Aysha Akhtar, Clive Roper, Sridhar Radhakrishnan, Balaji Bhyravbhatla, Madhujit Damle, Venkat Koushik Pulla, Johannes Hackethal, Reyk Horland, Albert P Li, Falguni Pati, Manu Smriti Singh, Paola Occhetta, Rohit Bisht, Prajakta Dandekar, Krishna Bhagavatula, Dasja Pajkrt, Michael Johnson, Tilo Weber, John Huang, Lisiena Hysenaj, Banerjee Mallar, Bhat Ramray, Santosh Dixit, Shreekanth Joshi, and Mandar Kulkarni
Advancing clinical and translational research in germ cell tumours (GCT): recommendations from the Malignant Germ Cell International Consortium., Adriana Fonseca, João Lobo, Florette K Hazard, Joanna J Gell, Peter K Nicholls, Robert S Weiss, Lindsay Klosterkemper, Samuel L Volchenboum, James C Nicholson, A Lindsay Frazier, James F Amatruda, Aditya Bagrodia, Michelle Lockley, and Matthew J Murray
Advancing Metabolic Flux Analysis in the Single-Cell Era, Maggi Smart
Africa-specific human genetic variation near CHD1L associates with HIV-1 load., Paul J McLaren, Immacolata Porreca, Gennaro Iaconis, Hoi Ping Mok, Subhankar Mukhopadhyay, Emre Karakoc, Sara Cristinelli, Cristina Pomilla, István Bartha, Christian W Thorball, Riley H Tough, Paolo Angelino, Cher S Kiar, Tommy Carstensen, Segun Fatumo, Tarryn Porter, Isobel Jarvis, William C Skarnes, Andrew Bassett, Marianne K DeGorter, Mohana Prasad Sathya Moorthy, Jeffrey F Tuff, Eun-Young Kim, Miriam Walter, Lacy M Simons, Arman Bashirova, Susan Buchbinder, Mary Carrington, Andrea Cossarizza, Andrea De Luca, James J Goedert, David B Goldstein, David W Haas, Joshua T Herbeck, Eric O Johnson, Pontiano Kaleebu, William Kilembe, Gregory D Kirk, Neeltje A Kootstra, Alex H Kral, Olivier Lambotte, Ma Luo, Simon Mallal, Javier Martinez-Picado, Laurence Meyer, José M Miro, Pravi Moodley, Ayesha A Motala, James I Mullins, Kireem Nam, Niels Obel, Fraser Pirie, Francis A Plummer, Guido Poli, Matthew A Price, Andri Rauch, Ioannis Theodorou, Alexandra Trkola, Bruce D Walker, Cheryl A Winkler, Jean-François Zagury, Stephen B Montgomery, Angela Ciuffi, Judd F Hultquist, Steven M Wolinsky, Gordon Dougan, Andrew M L Lever, Deepti Gurdasani, Harriet Groom, Manjinder S Sandhu, and Jacques Fellay
A genetic locus complements resistance to Bordetella pertussis-induced histamine sensitization., Abbas Raza, Sean A Diehl, Dimitry N Krementsov, Laure K Case, Dawei Li, Jason Kost, Robyn L Ball, Elissa J Chesler, Vivek M. Philip, Rui Huang, Yan Chen, Runlin Ma, Anna L Tyler, J Matthew Mahoney, Elizabeth P Blankenhorn, and Cory Teuscher
A genome-wide CRISPR activation screen identifies, Dinesh B Uthaya Kumar, Marina Yurieva, Jessica D S Grassmann, Lina Kozhaya, Caleb Dante McBride, Derya Unutmaz, and Adam Williams
A Genomically and Clinically Annotated Patient-Derived Xenograft Resource for Preclinical Research in Non-Small Cell Lung Cancer., Xing Yi Woo, Anuj Srivastava, Philip C Mack, Joel H. Graber, Brian J Sanderson, Michael W Lloyd, Mandy Chen, Sergii Domanskyi, Regina Gandour-Edwards, Rebekah A Tsai, James G. Keck, Mingshan Cheng, Margaret Bundy, Emily L Jocoy, Jonathan W Riess, William Holland, Stephen C. Grubb, James G Peterson, Grace Stafford, Carolyn Paisie, Steven Neuhauser, Radha Krishna Murthy Karuturi, Joshy George, Allen K. Simons, Margaret Chavaree, Clifford G Tepper, Neal Goodwin, Susan Airhart, Primo N Lara, Thomas H Openshaw, Edison Liu, David R Gandara, and Carol J Bult
Age-related changes to adipose tissue and peripheral neuropathy in genetically diverse HET3 mice differ by sex and are not mitigated by rapamycin longevity treatment., Jake W Willows, Morganne Robinson, Zahra Alshahal, Samantha K Morrison, Gargi Mishra, Harrison Cyr, Magdalena Blaszkiewicz, Gilian Gunsch, Sabrina DiPietro, Emma Paradie, Benjamin Tero, Anne Harrington, Larisa Ryzhova, Lucy Liaw, Peter C. Reifsnyder, David E Harrison, and Kristy L Townsend
A-Kinase Anchor Protein 1 deficiency causes mitochondrial dysfunction in mouse model of hyperoxia induced acute lung injury., Ramani Soundararajan, Helena Hernández-Cuervo, Timothy M Stearns, Anthony J Griswold, Sahebgowda Sidramagowda Patil, Jutaro Fukumoto, Venkata Ramireddy Narala, Lakshmi Galam, Richard Lockey, and Narasaiah Kolliputi
A machine-vision-based frailty index for mice., Leinani E. Hession, Gautam S Sabnis, Gary Churchill, and Vivek Kumar
A method for comparing multiple imputation techniques: A case study on the U.S. national COVID cohort collaborative., Elena Casiraghi, Rachel Wong, Margaret Hall, Ben D Coleman, Marco Notaro, Michael D Evans, Jena S Tronieri, Hannah Blau, Bryan Laraway, Tiffany J Callahan, Lauren E Chan, Carolyn T Bramante, John B Buse, Richard A Moffitt, Til Stürmer, Steven G Johnson, Yu Raymond Shao, Justin Reese, Peter N Robinson, Alberto Paccanaro, Giorgio Valentini, Jared D Huling, and Kenneth J Wilkins
A microbiome-dependent gut-brain pathway regulates motivation for exercise., Lenka Dohnalová, Patrick Lundgren, Jamie R E Carty, Nitsan Goldstein, Sebastian L Wenski, Pakjira Nanudorn, Sirinthra Thiengmag, Kuei-Pin Huang, Lev Litichevskiy, Hélène C Descamps, Karthikeyani Chellappa, Ana Glassman, Susanne Kessler, Jihee Kim, Timothy O Cox, Oxana Dmitrieva-Posocco, Andrea C Wong, Erik L Allman, Soumita Ghosh, Nitika Sharma, Kasturi Sengupta, Belinda Cornes, Nitai Dean, Gary Churchill, Tejvir S Khurana, Mark A Sellmyer, Garret A FitzGerald, Andrew D Patterson, Joseph A Baur, Amber L Alhadeff, Eric J N Helfrich, Maayan Levy, J Nicholas Betley, and Christoph A Thaiss
A mouse model of cone photoreceptor function loss, Anna S E N Naggert, Gayle B. Collin, Jieping Wang, Mark P. Krebs, and Bo Chang
A multi-lab experimental assessment reveals that replicability can be improved by using empirical estimates of genotype-by-lab interaction., Iman Jaljuli, Neri Kafkafi, Eliezer Giladi, Ilan Golani, Illana Gozes, Elissa J Chesler, Molly A. Bogue, and Yoav Benjamini
An allelic series of spontaneous Rorb mutant mice exhibit a gait phenotype, changes in retina morphology and behavior, and gene expression signatures associated with the unfolded protein response., George Murray, Jason A. Bubier, Oraya Zinder, Belinda S. Harris, James Clark, Mia-Cara Christopher, Courtany Hanley, Harianto Tjong, Meihong Li, Chew Yee Ngan, Laura G Reinholdt, Robert W. Burgess, and Abigail L D Tadenev
Analysis of genome-wide knockout mouse database identifies candidate ciliopathy genes., Kendall Higgins, Bret A Moore, Zorana Berberovic, Hibret A Adissu, Mohammad Eskandarian, Ann M Flenniken, Andy Shao, Denise M Imai, Dave Clary, Louise Lanoue, Susan Newbigging, Lauryl M J Nutter, David J Adams, Fatima Bosch, Robert Schneider, Steve D M Brown, Mary E Dickinson, Michael Dobbie, Paul Flicek, Xiang Gao, Sanjeev Galande, Anne Grobler, Jason D Heaney, Yann Herault, Martin Hrabe de Angelis, Hsian-Jean Genie Chin, Fabio Mammano, Chuan Qin, Toshihiko Shiroishi, Radislav Sedlacek, J-K Seong, Ying Xu, K C Kent Lloyd, Colin McKerlie, and Ala Moshiri
Analyzing C12orf65 (MTRFR) Expression in Mutant Mouse Models, Jupiter Kalinowski
An approach to promoting survival of human microglia in humanized mouse models of Alzheimer's Disease, Lauren Baptiste
An ethical framework for human embryology with embryo models., Nicolas C Rivron, Alfonso Martinez Arias, Martin Pera, Naomi Moris, and Hafez Ismaili M'hamdi
A new fasciocutaneous flap model identifies a critical role for endothelial Notch signaling in wound healing and flap survival., Khaled Dastagir, Jaba Gamrekelashvili, Nadjib Dastagir, Anne Limbourg, Dustin Kijas, Tamar Kapanadze, Peter M Vogt, and Florian P Limbourg
A New Standardized Clinical Model for Evaluation of Nerve Guides: A Single-Blinded Randomized Controlled Prospective Study., Khaled Dastagir, Christine Radtke, Nadjib Dastagir, Vesna Bucan, Sarah Strauß, Andreas Jokuszies, and Peter Maria Vogt
An expectation-maximization framework for comprehensive prediction of isoform-specific functions., Guy Karlebach, Leigh Carmody, Jagadish Chandrabose Sundaramurthi, Elena Casiraghi, Peter Hansen, Justin Reese, Christopher J Mungall, Giorgio Valentini, and Peter N Robinson
Animals, quality and the pursuit of relevance., Karen L. Svenson, Stephen D Krasinski, Michael Ellis, Nadia Rosenthal, Edison Liu, and Kenneth H Fasman
An integrated tumor, immune and microbiome atlas of colon cancer., Jessica Roelands, Peter J K Kuppen, Eiman I Ahmed, Raghvendra Mall, Tariq Masoodi, Parul Singh, Gianni Monaco, Christophe Raynaud, Noel F C C de Miranda, Luigi Ferraro, Tatiana C Carneiro-Lobo, Najeeb Syed, Arun Rawat, Amany Awad, Julie Decock, William Mifsud, Lance D Miller, Shimaa Sherif, Mahmoud G Mohamed, Darawan Rinchai, Marc Van den Eynde, Rosalyn W Sayaman, Elad Ziv, Francois Bertucci, Mahir Abdulla Petkar, Stephan Lorenz, Lisa Sara Mathew, Kun Wang, Selvasankar Murugesan, Damien Chaussabel, Alexander L Vahrmeijer, Ena Wang, Anna Ceccarelli, Khalid A Fakhro, Gabriele Zoppoli, Alberto Ballestrero, Rob A E M Tollenaar, Francesco M Marincola, Jérôme Galon, Souhaila Al Khodor, Michele Ceccarelli, Wouter Hendrickx, and Davide Bedognetti
An integrative approach for exploring the nature of fibroepithelial neoplasms., Jihui Yun, Woohang Heo, Eun-Shin Lee, Deukchae Na, Wonyoung Kang, Jinjoo Kang, Jeesoo Chae, Dakyung Lee, Woochan Lee, Jinha Hwang, Tae-Kyung Yoo, Bok Sil Hong, Hye-Youn Son, Dong-Young Noh, Charles Lee, Hyeong-Gon Moon, and Jong-Il Kim
A Novel ENU-Induced, Timothy J Hines, Janice Bailey, Hedi Liu, Anyonya R Guntur, Kevin L. Seburn, Samia L Pratt, Jonathan R Funke, Lisa M Tarantino, and Robert W. Burgess
A novel HSPB1S139F mouse model of Charcot-Marie-Tooth Disease, Keila S Espinoza, Kyra N Hermanson, Cameron A Beard, Nicholas U Schwartz, Justin M Snider, Benjamin E. Low, Michael V. Wiles, Yusuf A Hannun, Lina M Obeid, and Ashley J Snider
A novel human tau knock-in mouse model reveals interaction of Abeta and human tau under progressing cerebral amyloidosis in 5xFAD mice., Susan Barendrecht, An Schreurs, Stefanie Geissler, Victor Sabanov, Victoria Ilse, Vera Rieckmann, Rico Eichentopf, Anja Künemund, Benjamin Hietel, Sebastian Wussow, Katrin Hoffmann, Kerstin Körber-Ferl, Ravi S Pandey, Gregory W. Carter, Hans-Ulrich Demuth, Max Holzer, Steffen Roßner, Stephan Schilling, Christoph Preuss, Detlef Balschun, and Holger Cynis
Aon: a service to augment Alliance Genome Resource data with additional species., Sophie K Kearney, Alexander Berger, and Erich Baker
A path to translation: How 3D patient tumor avatars enable next generation precision oncology., Shree Bose, Margarida Barroso, Milan G Chheda, Hans Clevers, Elena Elez, Salma Kaochar, Scott E Kopetz, Xiao-Nan Li, Funda Meric-Bernstam, Clifford A Meyer, Haiwei Mou, Kristen M Naegle, Martin Pera, Zinaida Perova, Katerina A Politi, Benjamin J Raphael, Paul Robson, Rosalie C Sears, Josep Tabernero, David A Tuveson, Alana L Welm, Bryan E Welm, Christopher D Willey, Konstantin Salnikow, Jeffrey H Chuang, and Xiling Shen
A pilot metabolomic study of drug interaction with the immune response to seasonal influenza vaccination., Amnah Siddiqa, Yating Wang, Maheshwor Thapa, Dominique E Martin, Andreia N Cadar, Jenna M Bartley, and Shuzhao Li
Application of 4-D ultrasound-derived regional strain and proteomics analysis in, Frederick W Damen, Daniel P Gramling, Dorothy Ahlf Wheatcraft, Robert Y Wilpan, Mauro W Costa, and Craig J Goergen
A quantitative evaluation of topological motifs and their coupling in gene circuit state distributions., Benjamin Clauss and Mingyang Lu
Architecture of the outbred brown fat proteome defines regulators of metabolic physiology., Haopeng Xiao, Luiz H M Bozi, Yizhi Sun, Christopher L Riley, Vivek M. Philip, Mandy Chen, Jiaming Li, Tian Zhang, Evanna L Mills, Margo P Emont, Wenfei Sun, Anita Reddy, Ryan Garrity, Jiani Long, Tobias Becher, Laura Potano Vitas, Dina Laznik-Bogoslavski, Martha Ordonez, Xinyue Liu, Xiong Chen, Yun Wang, Weihai Liu, Nhien Tran, Yitong Liu, Yang Zhang, Aaron M Cypess, Andrew P White, Yuchen He, Rebecca Deng, Heiko Schöder, Joao A Paulo, Mark P Jedrychowski, Alexander S Banks, Yu-Hua Tseng, Paul Cohen, Linus T Tsai, Evan D Rosen, Samuel Klein, Maria Chondronikola, Fiona E McAllister, Nick Van Bruggen, Edward L Huttlin, Bruce M Spiegelman, Gary Churchill, Steven P Gygi, and Edward T Chouchani
A reference human induced pluripotent stem cell line for large-scale collaborative studies., Caroline B Pantazis, Andrian Yang, Erika Lara, Justin A McDonough, Cornelis Blauwendraat, Lirong Peng, Hideyuki Oguro, Jitendra Kanaujiya, Jizhong Zou, David Sebesta, Gretchen Pratt, Erin Cross, Jeffrey Blockwick, Philip Buxton, Lauren Kinner-Bibeau, Constance Medura, Christopher Tompkins, Stephen Hughes, Marianita Santiana, Faraz Faghri, Mike A Nalls, Daniel Vitale, Shannon Ballard, Yue A Qi, Daniel M Ramos, Kailyn M Anderson, Julia Stadler, Priyanka Narayan, Jason Papademetriou, Luke Reilly, Matthew P Nelson, Sanya Aggarwal, Leah U Rosen, Peter Kirwan, Venkat Pisupati, Steven L Coon, Sonja W Scholz, Theresa Priebe, Miriam Öttl, Jian Dong, Marieke Meijer, Lara J M Janssen, Vanessa S Lourenco, Rik van der Kant, Dennis Crusius, Dominik Paquet, Ana-Caroline Raulin, Guojun Bu, Aaron Held, Brian J Wainger, Rebecca M C Gabriele, Jackie M Casey, Selina Wray, Dad Abu-Bonsrah, Clare L Parish, Melinda S Beccari, Don W Cleveland, Emmy Li, Indigo V L Rose, Martin Kampmann, Carles Calatayud Aristoy, Patrik Verstreken, Laurin Heinrich, Max Y Chen, Birgitt Schüle, Dan Dou, Erika L F Holzbaur, Maria Clara Zanellati, Richa Basundra, Mohanish Deshmukh, Sarah Cohen, Richa Khanna, Malavika Raman, Zachary S Nevin, Madeline Matia, Jonas Van Lent, Vincent Timmerman, Bruce R Conklin, Katherine Johnson Chase, Ke Zhang, Salome Funes, Daryl A Bosco, Lena Erlebach, Marc Welzer, Deborah Kronenberg-Versteeg, Guochang Lyu, Ernest Arenas, Elena Coccia, Lily Sarrafha, Tim Ahfeldt, John C Marioni, William C Skarnes, Mark R Cookson, Michael E Ward, and Florian T Merkle
Are Genetic Effects on Gene Expression Correlated Within TAD Boundaries?, Alexander Daines
Assembly of 43 human Y chromosomes reveals extensive complexity and variation., Pille Hallast, Peter Ebert, Mark Loftus, Feyza Yilmaz, Peter A Audano, Glennis A Logsdon, Marc Jan Bonder, Weichen Zhou, Wolfram Höps, Kwondo Kim, Chong Li, Savannah J Hoyt, Philip C Dishuck, David Porubsky, Fotios Tsetsos, Jee Young Kwon, Qihui Zhu, Katherine M Munson, Patrick Hasenfeld, William T Harvey, Alexandra P Lewis, Jennifer Kordosky, Kendra Hoekzema, Human Genome Structural Variation Consortium (HGSVC), Rachel J O'Neill, Jan O Korbel, Chris Tyler-Smith, Evan E Eichler, Xinghua Shi, Christine R Beck, Tobias Marschall, Miriam K Konkel, and Charles Lee
Assessing GPX4 as a Blood-Based Biomarker via a LLM-engaged Gene Prioritization and Characterization Workflow, Bishesh Subba
Assessing the potential relevance of CEACAM6 as a blood transcriptional biomarker, Darawan Rinchai and Damien Chaussabel
Assessing the Potential Relevance of TMOD1 as a Blood Transcriptional Biomarker, Fuadur Omi
Assessment of axonal regeneration in Gjb1/CMT1X mouse model, Alsu Shagieva
Assessment of brain cancer atlas maps with multimodal imaging features., Enrico Capobianco and Marco Dominietto
Assessment of the Glycan-Binding Profile of Pseudomonas aeruginosa PAO1., Hector Sanchez, George A O'Toole, and Brent Berwin
Associations between HLA class II alleles and IgE sensitization to allergens in the Qatar Biobank cohort, Taushif Khan, Isabella Marie Ledoux, Ferdousey Aziz, Fatima Al Ali, Evonne Chin-Smith, Manar Ata, Mohammed Yousuf Karim, and Nico Mar
Associations of the skin, oral and gut microbiome with aging, frailty and infection risk reservoirs in older adults., Peter J Larson, Wei Zhou, Alba Santiago, Sarah Driscoll, Elizabeth Fleming, Anita Y Voigt, Ock K Chun, James J Grady, George A Kuchel, Julie T Robison, and Julia Oh
A standardized nomenclature for mammalian histone genes., Ruth L Seal, Paul Denny, Elspeth A Bruford, Anna K Gribkova, David Landsman, William F Marzluff, Monica McAndrews, Anna R Panchenko, Alexey K Shaytan, and Paul B Talbert
A structural variant at ASIP associated with the darkness of hair coat is found in multiple zebu cattle populations., Beatriz Batista Trigo, Natália Fonseca Alves, Marco Milanesi, José Fernando Garcia, Endashaw Terefe, Olivier Hanotte, Abdulfatai Tijjani, and Yuri Tani Utsunomiya
At-home blood collection and stabilization in high temperature climates using, Lauren G Brown, Amanda J Haack, Dakota S Kennedy, Karen N Adams, Jennifer E Stolarczuk, Meg G Takezawa, Erwin Berthier, Sanitta Thongpang, Fang Yun Lim, Damien Chaussabel, Mathieu Garand, and Ashleigh B Theberge
A training curriculum for retrieving, structuring, and aggregating information derived from the biomedical literature and large-scale data repositories, Darawan Rinchai and Damien Chaussabel
A TRANSCRIPTOMIC APPRECIATION OF CHILDHOOD MENINGOCOCCAL AND POLYMICROBIAL SEPSIS FROM A PRO-INFLAMMATORY AND TRAJECTORIAL PERSPECTIVE, A ROLE FOR VASCULAR ENDOTHELIAL GROWTH FACTOR A AND B MODULATION?, Asrar Rashid, Berit S Brusletto, Feras Al-Obeidat, Mohammed Toufiq, Govind Benakatti, Joe Brierley, Zainab A Malik, Zain Hussain, Hoda Alkhazaimi, Javed Sharief, Raziya Kadwa, Amrita Sarpal, Damien Chaussabel, Rayaz A Malik, Nasir Quraishi, Praveen Khilnani, Syed A Zaki, Rashid Nadeem, Guftar Shaikh, Ahmed Al-Dubai, Wael Hafez, and Amir Hussain
A Unique Role for Protocadherin γC3 in Promoting Dendrite Arborization through an Axin1-Dependent Mechanism., David M Steffen, Camille M Hanes, Kar Men Mah, Paula Valiño Ramos, Peter J Bosch, Dalton C Hinz, Jason J Radley, Robert W. Burgess, Andrew M Garrett, and Joshua A Weiner
A universal method for generating knockout mice in multiple genetic backgrounds using zygote electroporation., Tomohiro Tamari, Yoshihisa Ikeda, Kento Morimoto, Keiko Kobayashi, Saori Mizuno-Iijima, Shinya Ayabe, Akihiro Kuno, Seiya Mizuno, and Atsushi Yoshiki
Autologous humanized PDX modeling for immuno-oncology recapitulates features of the human tumor microenvironment., Michael Chiorazzi, Jan Martinek, Bradley Krasnick, Yunjiang Zheng, Keenan J Robbins, Rihao Qu, Gabriel Kaufmann, Zachary Skidmore, Melani Juric, Laura A Henze, Frederic Brösecke, Adam Adonyi, Jun Zhao, Liang Shan, Esen Sefik, Jacqueline Mudd, Ye Bi, S Peter Goedegebuure, Malachi Griffith, Obi Griffith, Abimbola Oyedeji, Sofia Fertuzinhos, Rolando Garcia-Milian, Daniel Boffa, Frank Detterbeck, Andrew Dhanasopon, Justin Blasberg, Benjamin Judson, Scott Gettinger, Katerina Politi, Yuval Kluger, Karolina Palucka, Ryan C Fields, and Richard A Flavell
Automated Assessment of Feeding Behaviors in Mice Using Machine Vision, Cayson Hamilton
Autosomal recessive LRP1-related syndrome featuring cardiopulmonary dysfunction, bone dysmorphology, and corneal clouding., Paul R Mark, Stephen A. Murray, Tao Yang, Alexandra Eby, Angela Lai, Di Lu, Jacob Zieba, Surender Rajasekaran, Elizabeth A VanSickle, Linda Z Rossetti, Lucia Guidugli, Kelly Watkins, Meredith S Wright, Caleb P Bupp, and Jeremy W Prokop
Bacterial Indole as a Multifunctional Regulator of Klebsiella oxytoca Complex Enterotoxicity., Nagender Ledala, Mishika Malik, Karim Rezaul, Sara Paveglio, Anthony Provatas, Aaron Kiel, Melissa Caimano, Yanjiao Zhou, Jonathan Lindgren, Kristyna Krasulova, Peter Illes, Zdeněk Dvořák, Sandhya Kortagere, Sabine Kienesberger, Amar Cosic, Lisa Pöltl, Ellen L Zechner, Subho Ghosh, Sridhar Mani, Justin D Radolf, and Adam P Matson
Baseline immune states (BIS) associated with vaccine responsiveness and factors that shape the BIS., Djamel Nehar-Belaid, Mark Sokolowski, Sathyabaarathi Ravichandran, Jacques Banchereau, Damien Chaussabel, and Duygu Ucar
Behavioral phenotypes revealed during reversal learning are linked with novel genetic loci in diversity outbred mice., Jared R Bagley, Lauren S Bailey, Leona H. Gagnon, Hao He, Vivek M. Philip, Laura G Reinholdt, Lisa M Tarantino, Elissa J Chesler, and James D Jentsch
Benchmarking algorithms to infer chromatininteractions from single-cell ATAC-seq data, Matthew Signorotti
Bifidobacterial carbohydrate/nucleoside metabolism enhances oxidative phosphorylation in white adipose tissue to protect against diet-induced obesity., Gihyeon Kim, Youngmin Yoon, Jin Ho Park, Jae Won Park, Myung-Guin Noh, Hyun Kim, Changho Park, Hyuktae Kwon, Jeong-Hyeon Park, Yena Kim, Jinyoung Sohn, Shinyoung Park, Hyeonhui Kim, Sun-Kyoung Im, Yeongmin Kim, Ha Yung Chung, Myung Hee Nam, Jee Young Kwon, Il Yong Kim, Yong Jae Kim, Ji Hyeon Baek, Hak Su Kim, George M Weinstock, Belong Cho, Charles Lee, Sungsoon Fang, Hansoo Park, and Je Kyung Seong
Biochemical pathways represented by Gene Ontology-Causal Activity Models identify distinct phenotypes resulting from mutations in pathways., David P. Hill, Harold J. Drabkin, Cynthia Smith, Kimberly M Van Auken, and Peter D'Eustachio
Biofabrication of 3D breast cancer models for dissecting the cytotoxic response of human T cells expressing engineered MAIT cell receptors., Madhuri Dey, Myong Hwan Kim, Momoka Nagamine, Ece Karhan, Lina Kozhaya, Mikail Dogan, Derya Unutmaz, and Ibrahim T Ozbolat
Biotransformation of Organophosphate Esters by Rice and Rhizosphere Microbiome: Multiple Metabolic Pathways, Mechanism, and Toxicity Assessment., Yuanyuan Yu, Xiaolong Yu, Dongqing Zhang, Ling Jin, Jiahui Huang, Xifen Zhu, Jianteng Sun, Miao Yu, and Lizhong Zhu
Blackcurrants Reduce the Risk of Postmenopausal Osteoporosis: A Pilot Double-Blind, Randomized, Placebo-Controlled Clinical Trial., Briana M Nosal, Junichi R Sakaki, Zachary Macdonald, Kyle Mahoney, Kijoon Kim, Matthew Madore, Staci Thornton, Thi Dong Binh Tran, George M. Weinstock, Elaine Choung-Hee Lee, and Ock K Chun
BMP10 functions independently from BMP9 for the development of a proper arteriovenous network., Hyunwoo Choi, Bo-Gyeong Kim, Yong Hwan Kim, Se-Jin Lee, Young Jae Lee, and S Paul Oh
Bones and Teeth, Peter Vogel, John P Sundberg, and Cheryl Ackert-Bicknell
Brain and spinal cord lesions in 28 inbred strains of aging mice., Jerrold M Ward, Peter Vogel, and John P Sundberg
Bridging mouse and human anatomies; a knowledge-based approach to comparative anatomy for disease model phenotyping., Jesús Ruberte, Paul N Schofield, John P Sundberg, Alfonso Rodriguez-Baeza, Ana Carretero, and Colin McKerlie
Bridging the rodent to human translational gap: Marmosets as model systems for the study of Alzheimer's disease., Stacey J Sukoff Rizzo, Gregg Homanics, David J Schaeffer, Lauren Schaeffer, Jung Eun Park, Julia Oluoch, Tingting Zhang, Annat Haber, Nicholas T Seyfried, Benedict Paten, Anna Greenwood, Takeshi Murai, Sang Ho Choi, Hasi Huhe, Julia Kofler, Peter L Strick, Gregory W. Carter, and Afonso C Silva
Bxb1-Integrase and Modified Bacterial Artificial Chromosomes as a Tool for Site-Specific Transgenesis of Large Donor DNA into Mouse Models, Thomas Mehaffey
Canagliflozin retards age-related lesions in heart, kidney, liver, and adrenal gland in genetically heterogenous male mice., Jessica M Snyder, Kerriann M Casey, Andrzej Galecki, David E Harrison, Hashan Jayarathne, Navasuja Kumar, Francesca Macchiarini, Nadia Rosenthal, Marianna Sadagurski, Adam B Salmon, Randy Strong, Richard A Miller, and Warren Ladiges
Cancer-associated mesothelial cells are regulated by the anti-Müllerian hormone axis., M Chauvin, M-C Meinsohn, S Dasari, P May, S Iyer, N M P Nguyen, E Oliva, Z Lucchini, N Nagykery, A Kashiwagi, R Mishra, Richard S. Maser, Julie Wells, Carol J Bult, A K Mitra, Patricia K Donahoe, and D Pépin
Cancer stem cells, not bulk tumor cells, determine mechanisms of resistance to SMO inhibitors., Joshy George, Yaohui Chen, Nourhan Abdelfattah, Keiko Yamamoto, Thomas D Gallup, Scott I Adamson, Brad Rybinski, Anuj Srivastava, Parveen Kumar, Min Gyu Lee, David S Baskin, Wen Jiang, Jong Min Choi, William Flavahan, Jeffrey Chuang, Betty Ys Kim, Jiaqiong Xu, Sung Yun Jung, and Kyuson Yun
Canine as a Comparative and Translational Model for Human Mammary Tumor., Jee Young Kwon, Nicholas Moskwa, Wonyoung Kang, Timothy M Fan, and Charles Lee
Carbamoylated Erythropoietin-Induced Cerebral Blood Perfusion and Vascular Gene Regulation., Jayanarayanan Sadanandan, Monica Sathyanesan, Yutong Liu, Neeraj K Tiwari, and Samuel S Newton
Causes of death and conditional survival estimates of long-term lung cancer survivors., Qun Zhang, Yuan Dai, Hongda Liu, Wenkui Sun, Yuming Huang, Zheng Gong, Shanlin Dai, Hui Kong, and Weiping Xie
Cell Cycle Changes Following TPHP Exposure of Induced Pluripotent Stem Cells, Lacie Low
Challenges and Future Prospects of Targeting Myostatin/Activin A Signaling to Treat Diseases of Muscle Loss and Metabolic Dysfunction., Se-Jin Lee, Shalender Bhasin, Lloyd Klickstein, Venkatesh Krishnan, and Daniel Rooks
Challenges and opportunities for modeling aging and cancer., Olga Anczuków, Susan Airhart, Jeffrey Chuang, Lisa M Coussens, George A Kuchel, Ron Korstanje, Sheng Li, Anna Lisa Lucido, Sandra S McAllister, Katerina Politi, Kornelia Polyak, Timothy Ratliff, Guangwen Ren, Jennifer J. Trowbridge, Duygu Ucar, and Karolina Palucka
Characterization of Glycosylation in a Cancer Model, Elaine Schumacher
Characterization of huntingtin interactomes and their dynamic responses in living cells by proximity proteomics., Hongyuan Xu, Johanna Bensalel, Sunil Raju, Enrico Capobianco, Michael L Lu, and Jianning Wei
Characterization of Spontaneous Sugar Modifications of Proteins, Lily Sabol
Characterization of the Pulmonary Phenotype of a Zfhx4 Mutant Mouse Model During Embryonic Development, Sara Hunstad
Characterizing de novo variants in the CRISPR-Cas9 edited KOLF2.2J iPSC cell line, Alyssa Lima
Characterizing retinal vascular development in New Zealand Obese mice, Julia Klein
Characterizing the C57BL/6J-Ighmbp2C495del mouse strainas a model for the study of SMARD1, Harold Peón Castro
Characterizing TNF-alpha levels in the context of Dnmt3a-mutant bone marrow, Brandon James
CHEK2 signaling is the key regulator of oocyte survival after chemotherapy., Chihiro Emori, Zachary Boucher, and Ewelina Bolcun-Filas
Chemotherapeutics and CAR-T Cell-Based Immunotherapeutics Screening on a 3D Bioprinted Vascularized Breast Tumor Model, Madhuri Dey, Myoung Hwan Kim, Mikail Dogan, Momoka Nagamine, Lina Kozhaya, Nazmiye Celik, Derya Unutmaz, and Ibrahim T. Ozbolat
ChIATAC is an efficient strategy for multi-omics mapping of 3D epigenomes from low-cell inputs., Haoxi Chai, Harianto Tjong, Peng Li, Wei Liao, Ping Wang, Chee-Hong Wong, Chew Yee Ngan, Warren J Leonard, Chia-Lin Wei, and Yijun Ruan
Children's Oncology Group's 2023 blueprint for research: Germ cell tumors., Roma Bhuta, Rachana Shah, Joanna J Gell, Jenny N Poynter, Aditya Bagrodia, Bryan J Dicken, Farzana Pashankar, A Lindsay Frazier, and Furqan Shaikh
Chow diet in mouse aging studies: nothing regular about it., Jennifer Lee, Chloe Purello, Sarah L Booth, Brian Bennett, Christopher D Wiley, and Ron Korstanje
Chromatin Looping Differences between 129S and CAST Mice Regulate Transcriptional Variation, Beatriz Alvarez
Chromophore supply modulates cone function and survival in retinitis pigmentosa mouse models., Yunlu Xue, Xiaomei Sun, Sean K Wang, Gayle B. Collin, Vladimir J Kefalov, and Constance L Cepko
Citizen science data reveal regional heterogeneity in phenological response to climate in the large milkweed bug,, Alexis Garretson, Tedra Cuddy, Alexandra G Duffy, iNaturalist Citizen Scientists, and Rebecca E Forkner
Clathrin light chain-conjugated drug delivery for cancer., Sungwook Jung, Liwei Jiang, Jing Zhao, Leonard D. Shultz, Dale L Greiner, Munhyung Bae, Xiaofei Li, Farideh Ordikhani, Rui Kuai, John Joseph, Vivek Kasinath, David R Elmaleh, and Reza Abdi
Clinically relevant mouse models of Charcot-Marie-Tooth type 2S., Paige B Martin, Sarah E Holbrook, Amy N Hicks, Timothy J Hines, Laurent P. Bogdanik, Robert W. Burgess, and Gregory A. Cox
Clinical validity assessment of genes frequently tested on intellectual disability/autism sequencing panels., Erin Rooney Riggs, Taylor I Bingaman, Carrie-Ann Barry, Andrea Behlmann, Krista Bluske, Bret Bostwick, Alison Bright, Chun-An Chen, Amanda R Clause, Avinash V Dharmadhikari, Mythily Ganapathi, Claudia Gonzaga-Jauregui, Andrew R Grant, Madeline Y Hughes, Se Rin Kim, Amanda Krause, Jun Liao, Aimé Lumaka, Michelle Mah, Caitlin M Maloney, Shruthi Mohan, Ikeoluwa A Osei-Owusu, Emma Reble, Olivia Rennie, Juliann M Savatt, Hermela Shimelis, Rebecca K Siegert, Tam P Sneddon, Courtney Thaxton, Kelly A Toner, Kien Trung Tran, Ryan Webb, Emma H Wilcox, Jiani Yin, Xinming Zhuo, Masa Znidarsic, Christa Lese Martin, Catalina Betancur, Jacob A S Vorstman, David T Miller, and Christian P Schaaf
Clonal hematopoiesis, aging and Alzheimer's disease., Pablo Sánchez Vela, Jennifer J. Trowbridge, and Ross L Levine
Cognitive impairment in post-acute sequelae of COVID-19 and short duration myalgic encephalomyelitis patients is mediated by orthostatic hemodynamic changes., Heather Day, Brayden Yellman, Sarah Hammer, Candace Rond, Jennifer Bell, Saeed Abbaszadeh, Greg Stoddard, Derya Unutmaz, Lucinda Bateman, and Suzanne D Vernon
Combination Organelle Mitochondrial Endoplasmic Reticulum Therapy (COMET) for Multidrug Resistant Breast Cancer., Lara Scheherazade Milane, Saket Dolare, Guangwen Ren, and Mansoor Amiji
Comparing Gene Sets by Comparing Gene Enrichmen, Irissa Machetta
Comparing Ovarian Reserve Damage Response to Different Sources of Radiation Exposure, Paris Guerrero
Comparison of eQTL Identification when using Single-end or Paired- end RNA-sequencing Data, Sam Ardery
Compendium-Wide Analysis of Pseudomonas aeruginosa Core and Accessory Genes Reveals Transcriptional Patterns across Strains PAO1 and PA14., Alexandra J Lee, Georgia Doing, Samuel L Neff, Taylor Reiter, Deborah A Hogan, and Casey S Greene
Complexity of the marine ecosystem in view of the human health factors: role of network science, Enrico Capobianco and Pier Francesco Moretti
Comprehensive ECG reference intervals in C57BL/6N substrains provide a generalizable guide for cardiac electrophysiology studies in mice., Manuela A Oestereicher, Janine M Wotton, Shinya Ayabe, Ghina Bou About, Tsz Kwan Cheng, Jae-Hoon Choi, Dave Clary, Emily M Dew, Lahcen Elfertak, Alain Guimond, Hamed Haseli Mashhadi, Jason D Heaney, Lois Kelsey, Piia Keskivali-Bond, Federico Lopez Gomez, Susan Marschall, Michael McFarland, Hamid Meziane, Violeta Munoz Fuentes, Ki-Hoan Nam, Zuzana Nichtová, Dale Pimm, Lynette Bower, Jan Prochazka, Jan Rozman, Luis Santos, Michelle Stewart, Nobuhiko Tanaka, Christopher S Ward, Amelia M Willett, Robert Wilson, Robert E Braun, Mary E Dickinson, Ann M Flenniken, Yann Herault, K C Kent Lloyd, Ann-Marie Mallon, Colin McKerlie, Stephen A. Murray, Lauryl M J Nutter, Radislav Sedlacek, Je Kyung Seong, Tania Sorg, Masaru Tamura, Sara Wells, Elida Schneltzer, Helmut Fuchs, Valerie Gailus-Durner, Martin Hrabe de Angelis, Jacqueline K White, and Nadine Spielmann
Concomitant inhibition of PPARγ and mTORC1 induces the differentiation of human monocytes into highly immunogenic dendritic cells., Fernando Erra Diaz, Ignacio Mazzitelli, Lucía Bleichmar, Claudia Melucci, Asa Thibodeau, Tomás Dalotto Moreno, Radu Marches, Gabriel A Rabinovich, Duygu Ucar, and Jorge Geffner
Considerations for policymakers for improving health care through telegenetics: A points to consider statement of the American College of Medical Genetics and Genomics (ACMG)., Heather E Williams, Lila Aiyar, Mary Beth Dinulos, David Flannery, Michelle L McClure, Michele A Lloyd-Puryear, Kunal Sanghavi, Tracy L Trotter, David Viskochil, and ACMG Advocacy and Government Affairs Committee
Contrasting Osteosarcoma and Epithelial Breast Cancer Immune Regulation in Murine Cell Lines, Juliana Fenimore
Co-option of endogenous retroviruses through genetic escape from TRIM28 repression., Rocio Enriquez-Gasca, Poppy A Gould, Hale Tunbak, Lucia Conde, Javier Herrero, Alexandra Chittka, Christine R Beck, Robert Gifford, and Helen M Rowe
Cortex-wide In-vivo Two-photon Calcium Imaging Analysis of Mice During Skilled Reaching, Andrea Ruiz D'Argence
Cry1 expression during postnatal development is critical for the establishment of normal circadian period, Aaron E Schirmer, Vivek Kumar, Andrew Schook, Eun Joo Song, Michael S Marshall, and Joseph S Takahashi
Current Views on Chr10q26 Contribution to Age-Related Macular Degeneration., Navdeep Gogna, Lillian F Hyde, Gayle B. Collin, Lisa Stone, Jurgen K Naggert, and Patsy M. Nishina
Cyfip2 allelic variation in C57BL/6J and C57BL/6NJ mice alters free-choice ethanol drinking but not binge-like drinking or wheel-running activity., Matthew C Hartmann, Walter D McCulley, Sarah E Holbrook, Megan M Haney, Caitlin G Smith, Vivek Kumar, and Alan M Rosenwasser
Cytokine release syndrome and cancer immunotherapies - historical challenges and promising futures., Deep Shah, Brian Soper, and Lindsay S. Shopland
Data Annotation Module for Frictionless Data, Naomie Gao
Deciphering the role of RNA structure in translation efficiency., Jianan Lin, Yang Chen, Yuping Zhang, Haifan Lin, and Zhengqing Ouyang
Deep learning image analysis quantifies tumor heterogeneity and identifies microsatellite instability in colon cancer., Jill C Rubinstein, Ali Foroughi Pour, Jie Zhou, Todd B Sheridan, Brian S White, and Jeffrey Chuang
Determining the Role of KZFPs in Modulating Chromatin Accessibilityand Gene Expression in Mouse Embryonic Stem Cells, Alex J. Mora Pagán
Determining the Role of the ELF3 gene in trophoblast cell differentiation. The Jacksons Laboratory Summer Student Program, Abraham Lopez
Developing and Using an R Package To Identify Causative Variations Driving Gene eQTL, Bryant Luna-Ramos
Development of a solubility parameter calculation-based method as a complementary tool to traditional techniques for indoor dust microplastic determination and risk assessment., Shanjun Song, Limei Cai, Yuhui Liu, Zijuan Peng, Chunyu Liu, Hui Jiao, Penghui Li, Qian Liu, Miao Yu, Tao Zhou, Qinghe Zhang, Henner Hollert, Xingchen Zhao, and Guibin Jiang
Differential regulation of gene expression pathways with dexamethasone and ACTH after early life seizures., Jeffrey L Brabec, Mohamed Ouardouz, J Matthew Mahoney, Rod C Scott, and Amanda E Hernan
Differential splicing of neuronal genes in a Trem2*R47H mouse model mimics alterations associated with Alzheimer's disease., Ravi S Pandey, Kevin P Kotredes, Michael Sasner, Gareth R Howell, and Gregory W. Carter
Diffuse alveolar hemorrhage in children with interstitial lung disease: Determine etiologies!, Katrin Knoflach, Christina Katharina Rapp, Nicolaus Schwerk, Julia Carlens, Martin Wetzke, Nagehan Emiralioğlu, Nural Kiper, Astrid Madsen Ring, Frederik Buchvald, Effrosyni Manali, Spyros Papiris, Simone Reu-Hofer, Matthias Kappler, Alexandra Schieber, Elias Seidl, Florian Gothe, Peter N Robinson, and Matthias Griese
Direct cell-to-cell transfer in stressed tumor microenvironment aggravates tumorigenic or metastatic potential in pancreatic cancer., Giyong Jang, Jaeik Oh, Eunsung Jun, Jieun Lee, Jee Young Kwon, Jaesang Kim, Sang-Hyuk Lee, Song Cheol Kim, Sung-Yup Cho, and Charles Lee
Discovering and Validating Mouse Models of Human Diseases: The Cinderella Effect, John P Sundberg, Jerrold M. Ward, Peter Vogel, and Paul N. Schofield
Distinct roles of estrone and estradiol in endothelial colony-forming cells., Alicia Ivory and Andrew S Greene
Distinct Tumor Necrosis Factor Alpha Receptors Dictate Stem Cell Fitness versus Lineage Output in Dnmt3a-Mutant Clonal Hematopoiesis., Jennifer M. SanMiguel, Elizabeth Eudy, Matthew A. Loberg, Kira Young, Jayna J. Mistry, Kristina D. Mujica, Logan S. Schwartz, Timothy M. Stearns, Grant A Challen, and Jennifer J. Trowbridge
Diversification of the ruminant skull along an evolutionary line of least resistance., Daniel P Rhoda, Annat Haber, and Kenneth D Angielczyk
DNA methylation provides diagnostic value for meningioma recurrence in clinical practice., Erica Shen, Nathan K Leclair, Kristi Herlth, Melissa Soucy, Nicholas Renzette, Xinming Zhuo, Kevin Kelly, Greg Omerza, Hilary Onyiuke, Ian McNeill, Leo Wolansky, Kevin Becker, Lei Li, Qian Wu, and Ketan R Bulsara
Driver Mutations Dictate the Immunologic Landscape and Response to Checkpoint Immunotherapy of Glioblastoma., Alan T Yeo, Rushil Shah, Konstantinos Aliazis, Rinku Pal, Tuoye Xu, Piyan Zhang, Shruti Rawal, Christopher M Rose, Frederick S Varn, Vicky A Appleman, Joon Yoon, Hemant Varma, Steven P Gygi, Roel G W Verhaak, Vassiliki A Boussiotis, and Al Charest
Dystonin modifiers of junctional epidermolysis bullosa and models of epidermolysis bullosa simplex without dystonia musculorum., Thomas J. Sproule, Robert Y Wilpan, John J Wilson, Benjamin E. Low, Yudai Kabata, Tatsuo Ushiki, Riichiro Abe, Michael V. Wiles, Derry C. Roopenian, and John P Sundberg
Early experience with targeted therapy as a first-line adjuvant treatment for pediatric low-grade glioma., Nathan K Leclair, William Lambert, Kimberley Roche, Eileen Gillan, Joanna J Gell, Ching C Lau, Gregory Wrubel, Joshua Knopf, Shirali Amin, Megan Anderson, Jonathan E Martin, Markus J Bookland, and David S Hersh
Early radial positional information in the cochlea is optimized by a precise linear BMP gradient and enhanced by SOX2., Matthew J Thompson, Caryl A Young, Vidhya Munnamalai, and David M Umulis
Editorial: Genetic basis of tolerance induction defects underlying the development of autoimmune pathologies., Jeremy Racine, Laurence Morel, Yi-Guang Chen, and David V. Serreze
Editorial: Physiology in extreme conditions: Adaptations and unexpected reactions, Volume II., Maria G Trivella, Enrico Capobianco, and Antonio L'Abbate
Editorial: Stromal and immune microenvironment in breast cancer metastasis., Xin Lu, Xia Liu, Toni Celià-Terrassa, and Guangwen Ren
Editorial: Targeting glucose metabolism in cancer immunity and immunotherapy., Olivier Feron, Chih-Hao Chang, and Frédérique Végran
Effect of hair cell orientation on mechanotransduction response in the vestibular system, Kayla Bright
Effects of Probiotics on Colitis-Induced Exacerbation of Alzheimer's Disease in, Bijayani Sahu, Lauren M Johnson, Mona Sohrabi, Anastasia A Usatii, Rachel M J Craig, Joshua B Kaelberer, Sathiya Priya Chandrasekaran, Harpreet Kaur, Suba Nookala, and Colin K Combs
Efficacy of a High Fat Diet and L-NAME Combinatory Mouse Model for Heart Failure With Preserved Ejection Fraction, Maggie Peng
Efficient in vivo neuronal genome editing in the mouse brain using nanocapsules containing CRISPR-Cas9 ribonucleoproteins., Jeanette M Metzger, Yuyuan Wang, Samuel S Neuman, Kathy J. Snow, Stephen A. Murray, Cathleen Lutz, Viktoriya Bondarenko, Jesi Felton, Kirstan Gimse, Ruosen Xie, Dongdong Li, Yi Zhao, Matthew T Flowers, Heather A Simmons, Subhojit Roy, Krishanu Saha, Jon E Levine, Marina E Emborg, and Shaoqin Gong
Elucidating Gli3 and Hand2 interactions in the developing mandible, Aria Hossain
Employing ChIP-Seq to Identify Novel Genes and Pathways for Congenital Diaphragmatic Hernia (CDH), Syed Ali
Engineering a "detect and destroy" skin probiotic to combat methicillin-resistant Staphylococcus aureus., Changhui Guan, Peter J Larson, Elizabeth Fleming, Alexander P Tikhonov, Sara Mootien, Trudy H Grossman, Caroline Golino, and Julia Oh
Engineering Human MAIT Cells with Chimeric Antigen Receptors for Cancer Immunotherapy., Mikail Dogan, Ece Karhan, Lina Kozhaya, Lindsey Placek, Xin Chen, Mesut Yigit, and Derya Unutmaz
Engineering induced pluripotent stem cells to capture critical mechanisms of dendritic cells activation, Richard Fu
Enhanced performance of gene expression predictive models with protein-mediated spatial chromatin interactions., Mateusz Chiliński, Jakub Lipiński, Abhishek Agarwal, Yijun Ruan, and Dariusz Plewczynski
Enhancing Deep Learning Model Evaluation via Attention Consistency Analysis in Spatial Transcriptomics Data, Dylan Agyemang
Epidermal Growth Factor Receptor Inhibition Is Protective in Hyperoxia-Induced Lung Injury., Zachary M Harris, Ying Sun, John Joerns, Brian Clark, Buqu Hu, Asawari Korde, Lokesh Sharma, Hyeon Jun Shin, Edward P Manning, Lindsey Placek, Derya Unutmaz, Gail Stanley, Hyung Chun, Maor Sauler, Govindarajan Rajagopalan, Xuchen Zhang, Min-Jong Kang, and Jonathan L Koff
Epigenetic activation of the FLT3 gene by ZNF384 fusion confers a therapeutic susceptibility in acute lymphoblastic leukemia., Xujie Zhao, Ping Wang, Jonathan D Diedrich, Brandon Smart, Noemi Reyes, Satoshi Yoshimura, Jingliao Zhang, Wentao Yang, Kelly Barnett, Beisi Xu, Zhenhua Li, Xin Huang, Jiyang Yu, Kristine Crews, Allen Eng Juh Yeoh, Marina Konopleva, Chia-Lin Wei, Ching-Hon Pui, Daniel Savic, and Jun J Yang
Epigenetic and transcriptomic characterization reveals progression markers and essential pathways in clear cell renal cell carcinoma., Yige Wu, Nadezhda V Terekhanova, Wagma Caravan, Nataly Naser Al Deen, Preet Lal, Siqi Chen, Chia-Kuei Mo, Song Cao, Yize Li, Alla Karpova, Ruiyang Liu, Yanyan Zhao, Andrew Shinkle, Ilya Strunilin, Cody Weimholt, Kazuhito Sato, Lijun Yao, Mamatha Serasanambati, Xiaolu Yang, Matthew Wyczalkowski, Houxiang Zhu, Daniel Cui Zhou, Reyka G Jayasinghe, Daniel Mendez, Michael C Wendl, David Clark, Chelsea Newton, Yijun Ruan, Melissa A Reimers, Russell K Pachynski, Chris Kinsinger, Scott Jewell, Daniel W Chan, Hui Zhang, Aadel A Chaudhuri, Milan G Chheda, Benjamin D Humphreys, Mehdi Mesri, Henry Rodriguez, James J Hsieh, Li Ding, and Feng Chen
Epigenetic memory of coronavirus infection in innate immune cells and their progenitors., Jin-Gyu Cheong, Arjun Ravishankar, Siddhartha Sharma, Christopher N Parkhurst, Simon A Grassmann, Claire K Wingert, Paoline Laurent, Sai Ma, Lucinda Paddock, Isabella C Miranda, Emin Onur Karakaslar, Djamel Nehar-Belaid, Asa Thibodeau, Michael J Bale, Vinay K Kartha, Jim K Yee, Minh Y Mays, Chenyang Jiang, Andrew W Daman, Alexia Martinez de Paz, Dughan Ahimovic, Victor Ramos, Alexander Lercher, Erik Nielsen, Sergio Alvarez-Mulett, Ling Zheng, Andrew Earl, Alisha Yallowitz, Lexi Robbins, Elyse LaFond, Karissa L Weidman, Sabrina Racine-Brzostek, He S Yang, David R Price, Louise Leyre, André F Rendeiro, Hiranmayi Ravichandran, Junbum Kim, Alain C Borczuk, Charles M Rice, R Brad Jones, Edward J Schenck, Robert J Kaner, Amy Chadburn, Zhen Zhao, Virginia Pascual, Olivier Elemento, Robert E Schwartz, Jason D Buenrostro, Rachel E Niec, Franck J Barrat, Lindsay Lief, Joseph C Sun, Duygu Ucar, and Steven Z Josefowicz
Epithelial mechanics are maintained by inhibiting cell fusion with age in Drosophila., Ari S Dehn, Levi Duhaime, Navdeep Gogna, Patsy M. Nishina, Kristina Kelley, and Vicki P Losick
Escherichia coli ST131 Associated with Increased Mortality in Bloodstream Infections from Urinary Tract Source., Amanda Brumwell, Granger Sutton, Paul M Lantos, Kate Hoffman, Felicia Ruffin, Lauren Brinkac, Thomas H Clarke, Mark D Adams, Vance G Fowler, Derrick E Fouts, and Joshua T Thaden
Essential function of Slmap in embryonic development and skeletal differentiation, Tess Kelly
Establishing in vitro mES-RPE cells bearing S28C TIMP3 mutation toidentify mouse models for Age Related Macular Degeneration., English Laserna
Evaluating the Role of RFX3 in Kidney Function and Cilial Development in an Alport Syndrome Mouse Model, Isabel Huesa
Evaluation of Associations of Growth Differentiation Factor-11, Growth Differentiation Factor-8, and Their Binding Proteins Follistatin and Follistatin-Like Protein-3 With Dementia and Cognition., Anne B Newman, Sheena Patel, Jorge R Kizer, Se-Jin Lee, Shalinder Bhasin, Peggy Cawthon, Nathan LeBrasseur, Russel P Tracy, Peter Ganz, and Steven R Cummings
Evaluation of Associations of Growth Differentiation Factor-11, Growth Differentiation Factor-8, and Their Binding Proteins, Follistatin and Follistatin-Like Protein-3, With Measures of Skeletal Muscle Mass, Muscle Strength, and Physical Function in Older Adults., Peggy M Cawthon, Sheena Patel, Anne B Newman, Shalender Bhasin, Liming Peng, Russell P Tracy, Jorge R Kizer, Se-Jin Lee, Luigi Ferrucci, Peter Ganz, Nathan K LeBrasseur, and Steven R Cummings
Evaluation of phenotype-driven gene prioritization methods for Mendelian diseases., Julius O B Jacobsen, Catherine Kelly, Valentina Cipriani, Peter N Robinson, and Damian Smedley
Evaluation of tarsal injuries in C57BL/6J male mice., Brenda Kick, Laura C. Anderson, Rosalinda A. Doty, Christine Wooley, Meaghan E Dyer, Torrian L Green, Veronica Knickerbocker, Zoe Brown, Samantha Loeber, Janine M Wotton, Bonnie L. Lyons, Linda L Waterman, and Zoë Bichler
Exon-intron boundary inhibits m, Zhiyuan Luo, Qilian Ma, Shan Sun, Ningning Li, Hongfeng Wang, Zheng Ying, and Shengdong Ke
Exploration of the Patient-Derived Xenografts at the Jackson Laboratory, Kara Barnao
Exploratory studies of oral and fecal microbiome in healthy human aging., Xin Zhou, Baohong Wang, Patrick C Demkowicz, Jethro Johnson, Yanfei Chen, Daniel Spakowicz, Yanjiao Zhou, Yair Dorsett, Lei Chen, Erica Sodergren, George A Kuchel, and George M. Weinstock
Exploring Adipose Cellular Heterogeneity in Mice, Gabriella von Dohlen
Exploring NKT cell and Perforin-mediated regulation of digit tip regeneration in both male and female adult mice, Nina Greeley
Extrachromosomal DNA amplifications in cancer., Eunhee Yi, Rocío Chamorro González, Anton G Henssen, and Roel G W Verhaak
Extrachromosomal DNA (ecDNA): an origin of tumor heterogeneity, genomic remodeling, and drug resistance., Lauren T Pecorino, Roel G W Verhaak, Anton Henssen, and Paul S Mischel
Extrachromosomal DNA in the cancerous transformation of Barrett's oesophagus., Jens Luebeck, Alvin Wei Tian Ng, Patricia C Galipeau, Xiaohong Li, Carissa A Sanchez, Annalise C Katz-Summercorn, Hoon Kim, Sriganesh Jammula, Yudou He, Scott M Lippman, Roel G W Verhaak, Carlo C Maley, Ludmil B Alexandrov, Brian J Reid, Rebecca C Fitzgerald, Thomas G Paulson, Howard Y Chang, Sihan Wu, Vineet Bafna, and Paul S Mischel
Family Screening in DCM: Can Genetics and Baseline Clinical Data Assist Prognostication and Surveillance Planning?, J Travis Hinson and Lisa M. Wren
Feasibility and value of genomic profiling in cancer of unknown primary: real-world evidence from prospective profiling study., Ryan W Huey, Aakash Tushar Shah, Honey V Reddi, Priyadarsini Dasari, James T Topham, Hyunsoo Hwang, Nishat Dhillon, Anneleis Willett, Brandon G Smaglo, Jeannelyn S Estrella, Asif Rashid, Aurelio Matamoros, Michael J Overman, Linda Choquette, Greg Omerza, Kevin Kelly, Xuemei Wang, Jonathan M Loree, Jens Rueter, Gauri R Varadhachary, and Kanwal Raghav
Focused ultrasound-mediated brain genome editing., Yeh-Hsing Lao, Robin Ji, Joyce K Zhou, Kathy J. Snow, Nancy Kwon, Ethan Saville, Siyu He, Shradha Chauhan, Chun-Wei Chi, Malika S Datta, Hairong Zhang, Chai Hoon Quek, S Sarah Cai, Mingqiang Li, Yaned Gaitan, Lawrence Bechtel, Shih-Ying Wu, Cathleen Lutz, Raju Tomer, Stephen A. Murray, Alejandro Chavez, Elisa E Konofagou, and Kam W Leong
Frailty-associated dysbiosis of human microbiotas in older adults in nursing homes., Julia Oh, Julie Robison, and George A Kuchel
Functional analysis of Collagen 17a1: A genetic modifier of junctional epidermolysis bullosa in mice., Thomas J. Sproule, Robert Y Wilpan, Benjamin E. Low, Kathleen A Silva, Deepak Reyon, J Keith Joung, Michael V. Wiles, Derry C. Roopenian, and John P Sundberg
Functional genomics of complex cancer genomes., Francesca Menghi and Edison Liu
"FunDNAmethyl" Mechanism for Developmental Restriction of a β-Cell Subpopulation., Cristina Aguayo-Mazzucato and Michael L. Stitzel
GA4GH Phenopackets: A Practical Introduction., Markus S Ladewig, Julius O B Jacobsen, Alex H Wagner, Daniel Danis, Baha El Kassaby, Michael Gargano, Tudor Groza, Michael Baudis, Robin Steinhaus, Dominik Seelow, Nikolaos E Bechrakis, Christopher J Mungall, Paul N Schofield, Olivier Elemento, Lindsay Smith, Julie A McMurry, Monica Munoz-Torres, Melissa A Haendel, and Peter N Robinson
GARP on hepatic stellate cells is essential for the development of liver fibrosis, Xiaolong Zhang, Pankaj Sharma, Patrick Maschmeyer, Yu Hu, Mumeng Lou, Jessica Kim, Hodaka Fujii, Derya Unutmaz, Robert F. Schwabe, and Florian Winau
GBMdeconvoluteR accurately infers proportions of neoplastic and immune cell populations from bulk glioblastoma transcriptomics data., Shoaib Ajaib, Disha Lodha, Steven Pollock, Gemma Hemmings, Martina A Finetti, Arief Gusnanto, Aruna Chakrabarty, Azzam Ismail, Erica Wilson, Frederick S Varn, Bethany Hunter, Andrew Filby, Asa A Brockman, David McDonald, Roel G W Verhaak, Rebecca A Ihrie, and Lucy F Stead
Gene expression genetics of the striatum of Diversity Outbred mice., Vivek M. Philip, Haoxi Chai, Michael C Saul, Price E Dickson, Jason A. Bubier, and Elissa J Chesler
Gene fusion dependence in acute myeloid leukemia Ewing sarcoma, and ependymoma cell lines, Aisha Pasha
Generalisable long COVID subtypes: findings from the NIH N3C and RECOVER programmes., Justin T Reese, Hannah Blau, Elena Casiraghi, Timothy Bergquist, Johanna J Loomba, Tiffany J Callahan, Bryan Laraway, Corneliu Antonescu, Ben D Coleman, Michael Gargano, Kenneth J Wilkins, Luca Cappelletti, Tommaso Fontana, Nariman Ammar, Blessy Antony, T M Murali, J Harry Caufield, Guy Karlebach, Julie A McMurry, Andrew Williams, Richard Moffitt, Jineta Banerjee, Anthony E Solomonides, Hannah Davis, Kristin Kostka, Giorgio Valentini, David Sahner, Christopher G Chute, Charisse Madlock-Brown, Melissa A Haendel, and Peter N. Robinson
Generalisable long COVID subtypes: findings from the NIH N3C and RECOVER programmes., Justin T Reese, Hannah Blau, Elena Casiraghi, Timothy Bergquist, Johanna J Loomba, Tiffany J Callahan, Bryan Laraway, Corneliu Antonescu, Ben D Coleman, Michael Gargano, Kenneth J Wilkins, Luca Cappelletti, Tommaso Fontana, Nariman Ammar, Blessy Antony, T M Murali, J Harry Caufield, Guy Karlebach, Julie A McMurry, Andrew Williams, Richard Moffitt, Jineta Banerjee, Anthony E Solomonides, Hannah Davis, Kristin Kostka, Giorgio Valentini, David Sahner, Christopher G Chute, Charisse Madlock-Brown, Melissa A Haendel, and Peter N Robinson
Generalized Tree Structure to Annotate Untargeted Metabolomics and Stable Isotope Tracing Data., Shuzhao Li and Shujian Zheng
Generation of the NeoThy mouse model for human immune system studies., Natalia M Del Rio, Liupei Huang, Lydia Murphy, Jayalaxmi Suresh Babu, Cross Matthew Daffada, William John Haynes, James G Keck, Michael A Brehm, Leonard D. Shultz, and Matthew E Brown
Generation of transgenic pluripotent stem cells to overexpress neuronal survival genes against stroke using CRISPR-activation technology, Pilar Saavedra-Weis
Genetically diverse mouse models of SARS-CoV-2 infection reproduce clinical variation in type I interferon and cytokine responses in COVID-19., Shelly J Robertson, Olivia Bedard, Kristin L McNally, Carl Shaia, Chad S Clancy, Matthew Lewis, Rebecca M Broeckel, Abhilash I Chiramel, Jeffrey G Shannon, Gail L Sturdevant, Rebecca Rosenke, Sarah L Anzick, Elvira Forte, Christoph Preuss, Candice N Baker, Jeffrey M. Harder, Catherine Brunton, Steven C. Munger, Daniel P Bruno, Justin B Lack, Jacqueline M Leung, Amirhossein Shamsaddini, Paul Gardina, Daniel E Sturdevant, Jian Sun, Craig Martens, Steven M Holland, Nadia Rosenthal, and Sonja M Best
Genetic architecture of heart mitochondrial proteome influencing cardiac hypertrophy., Karthickeyan Chella Krishnan, Elie-Julien El Hachem, Mark P Keller, Sanjeet G Patel, Luke Carroll, Alexis Diaz Vegas, Isabela Gerdes Gyuricza, Christine Light, Yang Cao, Calvin Pan, Karolina Elżbieta Kaczor-Urbanowicz, Varun Shravah, Diana Anum, Matteo Pellegrini, Chi Fung Lee, Marcus M Seldin, Nadia Rosenthal, Gary Churchill, Alan D Attie, Benjamin Parker, David E James, and Aldons J Lusis
Genetic dissection of the pluripotent proteome through multi-omics data integration., Selcan Aydin, Duy T Pham, Tian Zhang, Gregory R Keele, Daniel A Skelly, Joao A Paulo, Matthew Pankratz, Ted Choi, Steven P Gygi, Laura G Reinholdt, Christopher L. Baker, Gary Churchill, and Steven C. Munger
Genetic Diversity and Population Structure of Local Sudanese Sheep Populations Revealed by Whole-Genome Sequencing, A Amane, G Belay, Abdulfatai Tijjani, T Dessie, H H. Musa, and O Hanotte
Genetic mapping of microbial and host traits reveals production of immunomodulatory lipids by Akkermansia muciniphila in the murine gut., Qijun Zhang, Vanessa Linke, Katherine A Overmyer, Lindsay L Traeger, Kazuyuki Kasahara, Ian J Miller, Daniel E Manson, Thomas J Polaske, Robert L Kerby, Julia H Kemis, Edna A Trujillo, Thiru R Reddy, Jason D Russell, Kathryn L Schueler, Donald S Stapleton, Mary E Rabaglia, Marcus Seldin, Daniel M Gatti, Gregory R Keele, Duy T Pham, Joseph P Gerdt, Eugenio I Vivas, Aldons J Lusis, Mark P Keller, Gary Churchill, Helen E Blackwell, Karl W Broman, Alan D Attie, Joshua J Coon, and Federico E Rey
Genetic Mapping of Multiple Traits Identifies Novel Genes for Adiposity, Lipids, and Insulin Secretory Capacity in Outbred Rats., Thu Hong-Le, Wesley L Crouse, Gregory R Keele, Katie Holl, Osborne Seshie, Michael Tschannen, Ann Craddock, Swapan K Das, Alexandria M Szalanczy, Bailey McDonald, Michael Grzybowski, Jason Klotz, Neeraj K Sharma, Aron M Geurts, Chia-Chi Chuang Key, Gregory Hawkins, William Valdar, Richard Mott, and Leah C Solberg Woods
Genetic quality: a complex issue for experimental study reproducibility., Atsushi Yoshiki, Gregory Ballard, and Ana V Perez
Genetics and Genomics of Addiction., Jason A. Bubier
Genome-wide screening reveals the genetic basis of mammalian embryonic eye development., Justine M Chee, Louise Lanoue, Dave Clary, Kendall Higgins, Lynette Bower, Ann Flenniken, Ruolin Guo, David J Adams, Fatima Bosch, Robert E Braun, Steve D M Brown, H-J Genie Chin, Mary E Dickinson, Chih-Wei Hsu, Michael Dobbie, Xiang Gao, Sanjeev Galande, Anne Grobler, Jason D Heaney, Yann Herault, Martin Hrabe de Angelis, Fabio Mammano, Lauryl M J Nutter, Helen Parkinson, Chuan Qin, Toshi Shiroishi, Radislav Sedlacek, J-K Seong, Ying Xu, Brian Brooks, Colin McKerlie, K C Kent Lloyd, Henrik Westerberg, and Ala Moshiri
Genomic Medicine Year in Review: 2022., Teri A Manolio, Jahnavi Narula, Carol J Bult, Rex L Chisholm, Patricia A Deverka, Geoffrey S Ginsburg, Madison Goldrich, Eric D Green, Gail P Jarvik, George A Mensah, Erin M Ramos, Mary V Relling, Dan M Roden, Robb Rowley, and Marc S Williams
Germline thymidylate synthase deficiency impacts nucleotide metabolism and causes dyskeratosis congenita., Hemanth Tummala, Amanda Walne, Roberto Buccafusca, Jenna Alnajar, Anita Szabo, Peter N Robinson, Allyn McConkie-Rosell, Meredith Wilson, Suzanne Crowley, Veronica Kinsler, Anna-Maria Ewins, Pradeepa M Madapura, Manthan Patel, Nikolas Pontikos, Veryan Codd, Tom Vulliamy, and Inderjeet Dokal
Global and tissue-specific aging effects on murine proteomes., Gregory R Keele, Ji-Gang Zhang, John Szpyt, Ron Korstanje, Steven P Gygi, Gary Churchill, and Devin K Schweppe
Glucose oxidation-dependent survival of activated B cells provides a putative novel therapeutic target for lupus treatment., John J Wilson, Jian Wei, Andrea R Daamen, John D Sears, Elaine Bechtel, Colleen L Mayberry, Grace Stafford, Lesley S Bechtold, Amrie C Grammer, Peter E Lipsky, Derry C. Roopenian, and Chih-Hao Chang
GRAPE for fast and scalable graph processing and random-walk-based embedding, Luca Cappelletti, Tommaso Fontana, Elena Casiraghi, Vida Ravanmehr, Tiffany J. Callahan, Carlos Cano, Marcin P. Joachimiak, Christopher J. Mungall, Peter N Robinson, Justin Reese, and Giorgio Valentini
Growth kinetics and treatment of pharyngeal carcinoma in immunodeficient mice, Leah Spade
Guilt by association: EcDNA as a mobile transactivator in cancer., Yanfen Zhu, Liang Gong, and Chia-Lin Wei
GZMK(high) CD8(+) T effector memory cells are associated with CD15(high) neutrophil abundance in non-metastatic colorectal tumors and predict poor clinical outcome, Silvia Tiberti, Carlotta Catozzi, Ottavio Croci, Mattia Ballerini, Danilo Cagnina, Chiara Soriani, Caterina Scirgolea, Zheng Gong, Jiatai He, Angeli D Macandog, Amir Nabinejad, Carina B Nava Lauson, Arianna Quinte', Giovanni Bertalot, Wanda L Petz, Simona P Ravenda, Valerio Licursi, Paola Paci, Marco Rasponi, Luca Rotta, Nicola Fazio, Guangwen Ren, Uberto Fumagalli-Romario, Martin H Schaefer, Stefano Campaner, Enrico Lugli, Luigi Nezi, and Teresa Manzo
Harnessing large language models (LLMs) for candidate gene prioritization and selection., Mohammed Toufiq, Darawan Rinchai, Eleonore Bettacchioli, Basirudeen Syed Ahamed Kabeer, Taushif Khan, Bishesh Subba, Olivia White, Marina Yurieva, Joshy George, Noemie Jourde-Chiche, Laurent Chiche, Karolina Palucka, and Damien Chaussabel
Hematopoietic and Lymphoid Tissues, Harm HogenEsch and John P Sundberg
Hematopoietic stem cell aging and leukemia transformation., Patricia A Colom Díaz, Jayna J Mistry, and Jennifer J. Trowbridge
HEMDAG: a family of modular and scalable hierarchical ensemble methods to improve Gene Ontology term prediction., Marco Notaro, Marco Frasca, Alessandro Petrini, Jessica Gliozzo, Elena Casiraghi, Peter N Robinson, and Giorgio Valentini
Heterogeneity of Islet-Infiltrating IL-21+ CD4 T Cells in a Mouse Model of Type 1 Diabetes., Ashley E Ciecko, Yu Wang, Stephanie Harleston, Amber Drewek, David V. Serreze, Aron M Geurts, Chien-Wei Lin, and Yi-Guang Chen
High level of complexity and global diversity of the 3q29 locus revealed by optical mapping and long-read sequencing., Feyza Yilmaz, Umamaheswaran Gurusamy, Trenell J Mosley, Pille Hallast, Kwondo Kim, Yulia Mostovoy, Ryan H Purcell, Tamim H Shaikh, Michael E Zwick, Pui-Yan Kwok, Charles Lee, and Jennifer G Mulle
High-resolution microbiome analysis reveals exclusionary Klebsiella species competition in preterm infants at risk for necrotizing enterocolitis., Spencer Coleman, Katrin Unterhauser, Karim Rezaul, Nagender Ledala, Stephanie Lesmes, Melissa J Caimano, Yanjiao Zhou, Eric Jackson, Dawn Gratalo, Mark D Driscoll, and Adam P Matson
High sucrose consumption decouples intrinsic and synaptic excitability of AgRP neurons without altering body weight., Austin C Korgan, Klausen Oliveira-Abreu, Wei Wei, Sophie L A Martin, Zoey J D Bridges, José Henrique Leal-Cardoso, Catherine Kaczorowski, and Kristen M S O'Connell
High-temporal resolution profiling reveals distinct immune trajectories following the first and second doses of COVID-19 mRNA vaccines., Darawan Rinchai, Sara Deola, Gabriele Zoppoli, Basirudeen Syed Ahamed Kabeer, Sara Taleb, Igor Pavlovski, Selma Maacha, Giusy Gentilcore, Mohammed Toufiq, Lisa Mathew, Li Liu, Fazulur Rehaman Vempalli, Ghada Mubarak, Stephan Lorenz, Irene Sivieri, Gabriella Cirmena, Chiara Dentone, Paola Cuccarolo, Daniele Roberto Giacobbe, Federico Baldi, Alberto Garbarino, Benedetta Cigolini, Paolo Cremonesi, Michele Bedognetti, Alberto Ballestrero, Matteo Bassetti, Boris P Hejblum, Tracy Augustine, Nicholas Van Panhuys, Rodolphe Thiebaut, Ricardo Branco, Tracey Chew, Maryam Shojaei, Kirsty Short, Carl G Feng, PREDICT-19 Consortium, Susu M Zughaier, Andrea De Maria, Benjamin Tang, Ali Ait Hssain, Davide Bedognetti, Jean-Charles Grivel, and Damien Chaussabel
High-throughput bioprinting of the nasal epithelium using patient-derived nasal epithelial cells., I Deniz Derman, Miji Yeo, Diana Cadena, Megan Callender, Mian Horvath, Zengshuo Mo, Ruoyun Xiong, Elizabeth Fleming, Phylip Chen, Mark E Peeples, Karolina Palucka, Julia Oh, and Ibrahim T Ozbolat
High-Throughput Production of Diverse Xenobiotic Metabolites with Cytochrome P450-Transduced Huh7 Hepatoma Cell Lines., Choon-Myung Lee, Ken H Liu, Grant Singer, Gary W Miller, Shuzhao Li, Dean P Jones, and Edward T Morgan
HIV associated cell death: Peptide-induced apoptosis restricts viral transmission., Qiongyu Chen, Yan Zhao, Yonghong Zhang, Jianbo Zhang, Wenshu Lu, Chih-Hao Chang, and Shisong Jiang
HSC-derived fatty acid oxidation in steady-state and stressed hematopoiesis., Jayna J Mistry, Kristian Bowles, and Stuart A Rushworth
HSC-derived fatty acid oxidation in steady-state and stressed hematopoiesis., Jayna J Mistry, Kristian Bowles, and Stuart A Rushworth
Human Hematopoietic Stem Cell Engrafted IL-15 Transgenic NSG Mice Support Robust NK Cell Responses and Sustained HIV-1 Infection., Shawn A Abeynaike, Tridu R Huynh, Abeera Mehmood, Teha Kim, Kayla Frank, Kefei Gao, Cristina Zalfa, Angel Gandarilla, Leonard D. Shultz, and Silke Paust
Humanized mouse models for immuno-oncology research., Jane Chuprin, Hannah Buettner, Mina O Seedhom, Dale L Greiner, James G. Keck, Fumihiko Ishikawa, Leonard D. Shultz, and Michael A Brehm
Human Patient-Derived Brain Tumor Models to Recapitulate Ependymoma Tumor Vasculature., Min D Tang-Schomer, Markus J Bookland, Jack E Sargent, and Taylor N Jackvony
ICLAS LAQ Network for the Promotion of Animal Quality in Research., Patri Vergara, Gregory Ballard, Cynthia Besch-Williford, Nobuhito Hayashimoto, Cynthia Pekow, Ana Perez, Katja Schmidt, William Shek, Martin Toft, and Atsushi Yoshiki
Identification of a heterogeneous and dynamic ciliome during embryonic development and cell differentiation., Kelsey H Elliott, Sai K Balchand, Christian Louis Bonatto Paese, Ching-Fang Chang, Yanfen Yang, Kari M Brown, Daniel T Rasicci, Hao He, Konrad Thorner, Praneet Chaturvedi, Stephen A. Murray, Jing Chen, Aleksey Porollo, Kevin A Peterson, and Samantha A Brugmann
Identification of a heterogeneous and dynamic ciliome during embryonic development and cell differentiation., Kelsey H Elliott, Sai K Balchand, Christian Louis Bonatto Paese, Ching-Fang Chang, Yanfen Yang, Kari M Brown, Daniel T Rasicci, Hao He, Konrad Thorner, Praneet Chaturvedi, Stephen A. Murray, Jing Chen, Aleksey Porollo, Kevin A Peterson, and Samantha A Brugmann
Identification of a humanized mouse model for functional testing of immune-mediated biomaterial foreign body response., Joshua C Doloff, Minglin Ma, Atieh Sadraei, Hok Hei Tam, Shady Farah, Jennifer Hollister-Lock, Arturo J Vegas, Omid Veiseh, Victor M Quiroz, Amanda Rakoski, Stephanie Aresta-DaSilva, Andrew R Bader, Marissa Griffin, Gordon C Weir, Michael A Brehm, Leonard D. Shultz, Robert Langer, Dale L Greiner, and Daniel G Anderson
Identification of structural variants leading to non-reference gene structure, Grace Koo
Identification of TCR repertoires in asymptomatic COVID-19 patients by single-cell T-cell receptor sequencing., Han Bai, Junpeng Ma, Weikang Mao, Xuan Zhang, Yijun Nie, Jingcan Hao, Xiaorui Wang, Hongyu Qin, Qiqi Zeng, Fang Hu, Xin Qi, Xiaobei Chen, Dong Li, Binghong Zhang, Bingyin Shi, and Chengsheng Zhang
Identification, validation and biological characterisation of novel glioblastoma tumour microenvironment subtypes: implications for precision immunotherapy., K White, K Connor, M Meylan, A Bougoüin, M Salvucci, F Bielle, A C O'Farrell, K Sweeney, L Weng, G Bergers, P Dicker, D M Ashley, E S Lipp, J T Low, J Zhao, P Wen, R Prins, M Verreault, A Idbaih, A Biswas, J H M Prehn, D Lambrechts, I Arijs, F Lodi, G Dilcan, M Lamfers, S Leenstra, F Fabro, I Ntafoulis, J M Kros, J Cryan, F Brett, E Quissac, A Beausang, S MacNally, P O'Halloran, J Clerkin, O Bacon, A Kremer, R T Chi Yen, Frederick S Varn, Roel G W Verhaak, C Sautès-Fridman, W H Fridman, and A T Byrne
Identifying signatures of mutational mechanisms for tandem duplications found in breast cancers, Leila Shepard
Identifying susceptibility genes for essential hypertension by transcriptome-wide association study., Lu-Jie Huang, Qiao-Xia Zhang, Robert K Valenzuela, Jia-Chen Xu, Fang Yan, and Jie Ma
Identifying the Genetic Basis of Immune Checkpoint Inhibitor Induced Type 1 Diabetes, Tobias Emge
Identifying the gut microbe gene products that induce human immune cells to upregulate interferon-gamma production, Veronica Perdomo
Identifying Transcriptomic Signatures to Mediate Causal Effect of Genotype on Alzheimer's Disease, Simran Kaur
Immunomodulatory metabolite production by commensal microbiome bacteria, Christian Badawi
Immunosuppressive reprogramming of neutrophils by lung mesenchymal cells promotes breast cancer metastasis., Zheng Gong, Qing Li, Jiayuan Shi, Peishan Li, Li Hua, Leonard D. Shultz, and Guangwen Ren
Improvement of Long COVID symptoms over one year., Carlos R Oliveira, Leonard A Jason, Derya Unutmaz, Lucinda Bateman, and Suzanne D Vernon
Improving racial diversity in the genomics workforce: An examination of challenges and opportunities., Catherine Wicklund, Kunal Sanghavi, Bernice Coleman, Katherine Johansen Taber, Jacquelyn Y Taylor, Kathryn C Asalone, and Sarah Beachy
Inferring cell-type-specific causal gene regulatory networks during human neurogenesis., Nil Aygün, Dan Liang, Wesley L Crouse, Gregory R Keele, Michael I Love, and Jason L Stein
Information-theory analysis of mouse string-pulling agrees with Fitts's Law: Increasing task difficulty engages multiple sensorimotor modalities in a dual oscillator behavior., Pardeepak S Sandhu, Behroo Mirza Agha, Samsoon Inayat, Surjeet Singh, Hardeep S Ryait, Majid H Mohajerani, and Ian Q Whishaw
Inherited deletion of 9p22.3-p24.3 and duplication of 18p11.31-p11.32 associated with neurodevelopmental delay: Phenotypic matching of involved genes., Naser Ajami, Mohammad Amin Kerachian, Mehran Beiraghi Toosi, Farah Ashrafzadeh, Susan Hosseini, Peter N Robinson, and Mohammad Reza Abbaszadegan
Integrated DNA Copy Number and Expression Profiling Identifies IGF1R as a Prognostic Biomarker in Pediatric Osteosarcoma., Aaron M Taylor, Jiayi M Sun, Alexander Yu, Horatiu Voicu, Jianhe Shen, Donald A Barkauskas, Timothy J Triche, Julie M Gastier-Foster, Tsz-Kwong Man, and Ching C Lau
Integrative deep learning analysis improves colon adenocarcinoma patient stratification at risk for mortality., Jie Zhou, Ali Foroughi Pour, Hany Deirawan, Fayez Daaboul, Thazin Nwe Aung, Rafic Beydoun, Fahad Shabbir Ahmed, and Jeffrey Chuang
Intergenomic and epistatic interactions control free radical mediated pancreatic β-cell damage., Jing Chen, Renhua Li, Sarah Knapp, Guizhi Zhu, Robert L Whitener, Edward H. Leiter, and Clayton E Mathews
Introduction to Mouse Pathology, Jerrold M. Ward, Peter Vogel, and John P Sundberg
Investigating a Genetically Diverse Mouse Model for Vasculitis, Emma Hendrix
Investigating Loss of Methylation at the BRCA1 Promoter as a Mechanism of Chemoresistance, Benjamin C. Brim
Investigating the Infralimbic-Amygdala Circuit During Fear Extinction Learning, Grace O'Brien
Investigating the Oocyte DNA Damage Response after Radiation Exposure, Michelle Seeler
Investigating the role of potential PRDM9 interactors FUS and DEK in recombination hotspot activation., Adel Misherghi
Investigation of Metabolic Changes for Early Detection of Alzheimer's Disease, Megan Sherally Mathews
In vitro validation of inhibitors targeting TCF-4 and beta catenin interaction in WNT-activated tumors, Cynthia Martucci
In vivo activity of the dual SYK/FLT3 inhibitor TAK-659 against pediatric acute lymphoblastic leukemia xenografts., Keira Hughes, Kathryn Evans, Eric J Earley, Christopher M Smith, Stephen W Erickson, Timothy M Stearns, Vivek M. Philip, Steven Neuhauser, Jeffrey Chuang, Emily L Jocoy, Carol J Bult, Beverly A Teicher, Malcolm A Smith, and Richard B Lock
In Vivo Imaging of Bone Marrow Long-Chain Fatty Acid Uptake., Jayna J Mistry and Stuart A Rushworth
ISSCR standards for the use of human stem cells in basic research., Tenneille E Ludwig, Peter W Andrews, Ivana Barbaric, Nissim Benvenisty, Anita Bhattacharyya, Jeremy M Crook, Laurence M Daheron, Jonathan S Draper, Lyn E Healy, Meritxell Huch, Maneesha S Inamdar, Kim B Jensen, Andreas Kurtz, Madeline A Lancaster, Prisca Liberali, Matthias P Lutolf, Christine L Mummery, Martin Pera, Yoji Sato, Noriko Shimasaki, Austin G Smith, Jihwan Song, Claudia Spits, Glyn Stacey, Christine A Wells, Tongbiao Zhao, and Jack T Mosher
JACKIE: Fast Enumeration of Genome-Wide Single- and Multicopy CRISPR Target Sites and Their Off-Target Numbers., Jacqueline Jufen Zhu and Albert Cheng
KG-Hub-building and exchanging biological knowledge graphs., J Harry Caufield, Tim Putman, Kevin Schaper, Deepak R Unni, Harshad Hegde, Tiffany J Callahan, Luca Cappelletti, Sierra A T Moxon, Vida Ravanmehr, Seth Carbon, Lauren E Chan, Katherina Cortes, Kent A Shefchek, Glass Elsarboukh, Jim Balhoff, Tommaso Fontana, Nicolas Matentzoglu, Richard M Bruskiewich, Anne E Thessen, Nomi L Harris, Monica C Munoz-Torres, Melissa A Haendel, Peter N Robinson, Marcin P Joachimiak, Christopher J Mungall, and Justin T Reese
Landscape of genetic variants in sporadic meningiomas captured with clinical genomics., Nathan K Leclair, Erica Shen, Qian Wu, Leo Wolansky, Kevin Becker, Lei Li, and Ketan R Bulsara
Large-Scale CRISPRi and Transcriptomics of Staphylococcus epidermidis Identify Genetic Factors Implicated in Lifestyle Versatility., Michelle Spoto, Johanna P. Riera Puma, Elizabeth Fleming, Changhui Guan, Yvette Ondouah Nzutchi, Dean Kim, and Julia Oh
Lesion environments direct transplanted neural progenitors towards a wound repair astroglial phenotype in mice., T M O'Shea, Y Ao, S Wang, A L Wollenberg, J H Kim, R A Ramos Espinoza, Anne M. Czechanski, Laura G. Reinholdt, T J Deming, and M V Sofroniew
Leveraging genetic diversity in mice to inform individual differences in brain microstructure and memory., Thomas J Murdy, Amy R Dunn, Surjeet Singh, Maria Telpoukhovskaia, Shanrong Zhang, Jacqueline K White, Itamar Kahn, Marcelo Febo, and Catherine Kaczorowski
Lifespan benefits for the combination of rapamycin plus acarbose and for captopril in genetically heterogeneous mice., Randy Strong, Richard A Miller, Catherine J Cheng, James F Nelson, Jonathan Gelfond, Shailaja Kesaraju Allani, Vivian Diaz, Angela Olsen Dorigatti, Jonathan Dorigatti, Elizabeth Fernandez, Andrzej Galecki, Brett Ginsburg, Karyn L Hamilton, Martin A Javors, Kerry Kornfeld, Matt Kaeberlein, Suja Kumar, David B Lombard, Marisa Lopez-Cruzan, Benjamin F Miller, Peter Rabinovitch, Peter C. Reifsnyder, Nadia Rosenthal, Molly A. Bogue, Adam B Salmon, Yousin Suh, Eric Verdin, Herbert Weissbach, John Newman, Francesca Maccchiarini, and David E. Harrison
Lineage-coupled clonal capture identifies clonal evolution mechanisms and vulnerabilities of BRAF, Ze-Yan Zhang, Yingwen Ding, Ravesanker Ezhilarasan, Tenzin Lhakhang, Qianghu Wang, Jie Yang, Aram S Modrek, Hua Zhang, Aristotelis Tsirigos, Andrew Futreal, Giulio F Draetta, Roel G W Verhaak, and Erik P Sulman
Lipid alternations in the plasma of COVID-19 patients with various clinical presentations., Xiao Liang, Xin Qi, Jin Yang, Xiaorui Wang, Hongyu Qin, Fang Hu, Han Bai, Yixin Li, Chengsheng Zhang, and Bingyin Shi
Lipid-laden lung mesenchymal cells foster breast cancer metastasis via metabolic reprogramming of tumor cells and natural killer cells., Zheng Gong, Qing Li, Jiayuan Shi, Edison Liu, Leonard D. Shultz, and Guangwen Ren
Lipidomic QTL in Diversity Outbred mice identifies a novel function for α/β hydrolase domain 2 (Abhd2) as an enzyme that metabolizes phosphatidylcholine and cardiolipin., Tara R Price, Donnie S Stapleton, Kathryn L Schueler, Marie K Norris, Brian W Parks, Brian S Yandell, Gary Churchill, William L Holland, Mark P Keller, and Alan D Attie
Longitudinal investigation of the gut microbiome in a Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS) cohort, Stefanie Moncayo
Longitudinal Molecular Characterization of Oligodendrogliomas, Gordon Y. Ye
Long-Read Sequencing Identifies Structural Variants That Alter Gene Expression In Diverse Mice, Varun Moser
Long-term effects of canagliflozin treatment on the skeleton of aged UM-HET3 mice., Gozde Yildirim, Edmara T P Bergamo, Sher Bahadur Poudel, Ryan R Ruff, Manisha Dixit, Bin Hu, Dindo Q Mijares, Lukasz Witek, Carolyn Chlebek, David E Harrison, Randy Strong, Richard A Miller, Warren Ladiges, Timothy G Bromage, Clifford J Rosen, and Shoshana Yakar
Loss of circSRY reduces γH2AX level in germ cells and impairs mouse spermatogenesis., Yanze Song, Min Chen, Yingfan Zhang, Jiayi Li, Bowen Liu, Na Li, Min Chen, Miaomiao Qiao, Nan Wang, Yuanwei Cao, Shan Lu, Jian Chen, Wen Sun, Fei Gao, and Haoyi Wang
Loss of Pex1 in Inner Ear Hair Cells Contributes to Cochlear Synaptopathy and Hearing Loss., Stephanie A Mauriac, Thibault Peineau, Aamir Zuberi, Cathleen Lutz, and Gwénaëlle S G Géléoc
Loss of resilience contributes to detrusor underactivity in advanced age., Ramalakshmi Ramasamy, Dylan Baker, Fouad Lemtiri-Chlieh, Dawn A Rosenberg, Eric Woon, Iman M Al-Naggar, Cara C Hardy, Eric S Levine, George A Kuchel, Jenna M Bartley, and Phillip P Smith
LUMOS - Low and Intermediate Grade Glioma Umbrella Study of Molecular Guided TherapieS at relapse: Protocol for a pilot study., Benjamin Y Kong, Hao-Wen Sim, Anna K Nowak, Sonia Yip, Elizabeth H Barnes, Bryan W Day, Michael E Buckland, Roel G W Verhaak, Terrance Johns, Cleo Robinson, Marc A Thomas, Tindaro Giardina, Zarnie Lwin, Andrew M Scott, Jonathon Parkinson, Rosalind Jeffree, Richard de Abreu Lourenco, Elizabeth J Hovey, Lawrence M Cher, Ganessan Kichendasse, Mustafa Khasraw, Merryn Hall, Emily Tu, Benhur Amanuel, Eng-Siew Koh, and Hui K Gan
Maintenance of Human Primordial Germ Cell-Like Cells in a Long-Term Culture System., Joanna J Gell and Toshi Shioda
Mako: A Graph-based Pattern Growth Approach to Detect Complex Structural Variants., Jiadong Lin, Xiaofei Yang, Walter Kosters, Tun Xu, Yanyan Jia, Songbo Wang, Qihui Zhu, Mallory Ryan, Li Guo, Chengsheng Zhang, The Human Genome Structural Variation Consortium, Charles Lee, Scott E Devine, Evan E Eichler, and Kai Ye
MATR3 P154S knock-in mice do not exhibit motor, muscle or neuropathologic features of ALS., Marissa Dominick, Nicole Houchins, Vinisha Venugopal, Aamir Zuberi, Cathleen Lutz, Bessie Meechooveet, Kendall Van Keuren-Jensen, Robert Bowser, and David X Medina
Mechanical Washing Prevents Transmission of Bacterial, Viral, and Protozoal Murine Pathogens from Cages., Amanda C Ritter, Rodolfo J Ricart Arbona, Anthony J Mourino, Michael B Palillo, Mert Aydin, James R Fahey, and Neil S Lipman
Mechanism of STMN2 cryptic splice-polyadenylation and its correction for TDP-43 proteinopathies, Michael W Baughn, Ze'ev Melamed, Jone López-Erauskin, Melinda S Beccari, Karen Ling, Aamir Zuberi, Maximiliano Presa, Elena Gonzalo-Gil, Roy Maimon, Sonia Vazquez-Sanchez, Som Chaturvedi, Mariana Bravo-Hernández, Vanessa Taupin, Stephen Moore, Jonathan W Artates, Eitan Acks, I Sandra Ndayambaje, Ana R Agra de Almeida Quadros, Paayman Jafar-Nejad, Frank Rigo, C Frank Bennett, Cathleen Lutz, Clotilde Lagier-Tourenne, and Don W Cleveland
Meiotic drive in house mice: mechanisms, consequences, and insights for human biology., Uma P Arora and Beth L Dumont
Mendelian gene identification through mouse embryo viability screening., Pilar Cacheiro, Carl Henrik Westerberg, Jesse Mager, Mary E Dickinson, Lauryl M J Nutter, Violeta Muñoz-Fuentes, Chih-Wei Hsu, Ignatia B Van den Veyver, Ann M Flenniken, Colin McKerlie, Stephen A Murray, Lydia Teboul, Jason D Heaney, K C Kent Lloyd, Louise Lanoue, Robert E Braun, Jacqueline K White, Amie K Creighton, Valerie Laurin, Ruolin Guo, Dawei Qu, Sara Wells, James Cleak, Rosie Bunton-Stasyshyn, Michelle Stewart, Jackie Harrisson, Jeremy Mason, Hamed Haseli Mashhadi, Helen Parkinson, Ann-Marie Mallon, International Mouse Phenotyping Consortium, Genomics England Research Consortium, and Damian Smedley
Metabolic Control of T follicular helper cell polarization, Anthony Mendoza
Metabolic regulation of CXCR5 expression in T cells via the kynurenine pathway, Thi-Tina N. Nguyen
Metabolic Responses of Normal Rat Kidneys to a High Salt Intake., Satoshi Shimada, Brian Hoffmann, Chun Yang, Theresa Kurth, Andrew S Greene, Mingyu Liang, Ranjan K Dash, and Allen W Cowley
Metformin is associated with reduced COVID-19 severity in patients with prediabetes., Lauren E Chan, Elena Casiraghi, Bryan Laraway, Ben D Coleman, Hannah Blau, Adnin Zaman, Nomi L Harris, Kenneth Wilkins, Blessy Antony, Michael Gargano, Giorgio Valentini, David Sahner, Melissa Haendel, Peter N Robinson, Carolyn Bramante, and Justin Reese
Microbial glutamate metabolism predicts intravenous cocaine self-administration in diversity outbred mice., Thi Dong Binh Tran; Hoan Nguyen; Erica Sodergren Weinstock; Center for Systems Neurogenetics of Addiction, The Jackson Laboratory; Price E Dickson; Susan N Wright; Vivek M. Philip; George M. Weinstock; Elissa J Chesler; Yanjiao Zhou; and Jason A. Bubier
Microbiome modulates immunotherapy response in cutaneous squamous cell carcinoma, Anita Y Voigt, Andrew Walter, Timothy Young, John P Graham, Bruna M. Batista Bittencourt, Alvero de Mingo Pulido, Karol Prieto, Kenneth Y. Tsai, John P Sundberg, and Julia Oh
Microbiota-dependent proteolysis of gluten subverts diet-mediated protection against type 1 diabetes., Matthew C Funsten, Leonid A Yurkovetskiy, Andrey Kuznetsov, Derek Reiman, Camilla H F Hansen, Katharine I Senter, Jean Lee, Jeremy Ratiu, Shiva Dahal-Koirala, Dionysios A Antonopoulos, Gary M Dunny, Ludvig M Sollid, David Serreze, Aly A Khan, and Alexander V Chervonsky
Misregulation of mitochondria-lysosome contact dynamics in Charcot-Marie-Tooth Type 2B disease Rab7 mutant sensory peripheral neurons, Yvette C. Wong, Nirupa D. Jayaraj, Tayler B. Belton, George C. Shum, Hannah E. Ball, Dongjun Ren, Abby Tadenev, Dimitri Krainc, Robert W. Burgess, and Daniela M. Menichella
Modeling hyperopia in Prss56glcr4 mice: Molecular comparativ analysis with Mfrprd6 and QTL mapping of axial length alterations, Jessica Guzman
Modeling islet enhancers using deep learning identifies candidate causal variants at loci associated with T2D and glycemic traits., Sanjarbek Hudaiberdiev, D Leland Taylor, Wei Song, Narisu Narisu, Redwan M Bhuiyan, Henry J Taylor, Xuming Tang, Tingfen Yan, Amy J Swift, Lori L Bonnycastle, Diamante Consortium, Shuibing Chen, Michael L. Stitzel, Michael R Erdos, Ivan Ovcharenko, and Francis S Collins
Modeling the dynamics of BRCA1 promoter methylation relevant to triple-negative breast cancer, Anthony Woodruff
Modifiers of Charcot-Marie-Tooth Disease Type 1A Neuropathy in the Sox10/Egr2 Networ, Leeza Kopaeva
Modulation of RNA splicing enhances response to BCL2 inhibition in leukemia., Eric Wang, Jose Mario Bello Pineda, Won Jun Kim, Sisi Chen, Jessie Bourcier, Maximilian Stahl, Simon J Hogg, Jan Phillipp Bewersdorf, Cuijuan Han, Michael E Singer, Daniel Cui, Caroline E Erickson, Steven M Tittley, Alexander V Penson, Katherine Knorr, Robert F Stanley, Jahan Rahman, Gnana Krishnamoorthy, James A Fagin, Emily Creger, Elizabeth McMillan, Chi-Ching Mak, Matthew Jarvis, Carine Bossard, Darrin M Beaupre, Robert K Bradley, and Omar Abdel-Wahab
Modulation of RNA splicing enhances response to BCL2 inhibition in leukemia., Eric Wang, Jose Mario Bello Pineda, Won Jun Kim, Sisi Chen, Jessie Bourcier, Maximilian Stahl, Simon J Hogg, Jan Phillipp Bewersdorf, Cuijuan Han, Michael E Singer, Daniel Cui, Caroline E Erickson, Steven M Tittley, Alexander V Penson, Katherine Knorr, Robert F Stanley, Jahan Rahman, Gnana Krishnamoorthy, James A Fagin, Emily Creger, Elizabeth McMillan, Chi-Ching Mak, Matthew Jarvis, Carine Bossard, Darrin M Beaupre, Robert K Bradley, and Omar Abdel-Wahab
Molecular Approaches to Increase Stroke Resiliency Using Human Pluripotent Stem Cell- Derived Neurons, Elise MacDonald
Molecular Mechanisms of ARID5B-Mediated Genetic Susceptibility to Acute Lymphoblastic Leukemia., Xujie Zhao, Maoxiang Qian, Charnise Goodings, Yang Zhang, Wenjian Yang, Ping Wang, Beisi Xu, Cheng Tian, Ching-Hon Pui, Stephen P Hunger, Elizabeth A Raetz, Meenakshi Devidas, Mary V Relling, Mignon L Loh, Daniel Savic, Chunliang Li, and Jun J Yang
Morphological analysis of cutaneous T-cell lymphoma unaging using attention-based deep learning, Amaris Huang
Mouse Genetic Nomenclature: The Underpinning of Mouse Genetics, John P Sundberg, Dale A. Begley, Melissa L. Berry, Michelle N Perry, David R. Shaw, and Paul N. Schofield
Mouse models for immuno-oncology., Marcus Bosenberg, Edison Liu, Chun I. Yu, and Karolina Palucka
Mouse Phenome Database: towards a more FAIR-compliant and TRUST-worthy data repository and tool suite for phenotypes and genotypes., Molly A. Bogue, Robyn L Ball, Vivek M. Philip, David O Walton, Matthew H Dunn, Georgi Kolishovski, Anna Lamoureux, Matthew Gerring, Hongping Liang, Jake Emerson, Timothy M Stearns, Hao He, Gaurab Mukherjee, John Bluis, Sejal Desai, Beth A. Sundberg, Beena Kadakkuzha, Govindarajan Kunde-Ramamoorthy, and Elissa J Chesler
Multidimensional single-cell analysis of human peripheral blood reveals characteristic features of the immune system landscape in aging and frailty., Oscar Junhong Luo, Wen Lei, Guodong Zhu, Zhiyao Ren, Yudai Xu, Chanchan Xiao, Hongyi Zhang, Junxiang Cai, Zhiping Luo, Lijuan Gao, Jun Su, Lei Tang, Wei Guo, Huanxing Su, Zhang-Jin Zhang, Evandro Fei Fang, Yijun Ruan, Sean Xiao Leng, Zhenyu Ju, Huiling Lou, Junling Gao, Nan Peng, Jie Chen, Zhijun Bao, Feng Liu, and Guobing Chen
Multi-omics analysis identifies drivers of protein phosphorylation., Tian Zhang, Gregory R Keele, Isabela Gerdes Gyuricza, Matthew J Vincent, Catherine Brunton, Timothy A Bell, Pablo Hock, Ginger D Shaw, Steven C. Munger, Fernando Pardo-Manuel de Villena, Martin T Ferris, Joao A Paulo, Steven P Gygi, and Gary Churchill
Multi-'omics of gut microbiome-host interactions in short- and long-term myalgic encephalomyelitis/chronic fatigue syndrome patients., Ruoyun Xiong, Courtney Gunter, Elizabeth Fleming, Suzanne D Vernon, Lucinda Bateman, Derya Unutmaz, and Julia Oh
Multiplex immunofluorescence-guided laser capture microdissection for spatial transcriptomics of metastatic melanoma tissues., Jan Martinek, Te-Chia Wu, Lili Sun, Jianan Lin, Kyung In Kim, Florentina Marches, Paul Robson, Joshy George, and Karolina Palucka
Multi-species convergent functional genomics analysis of substance usedisorders reveals shared genes in poly-drug use, Bailey E. West
MYC regulates a pan-cancer network of co-expressed oncogenic splicing factors., Laura M Urbanski, Mattia Brugiolo, SungHee Park, Brittany Lynn Angarola, Nathan Leclair, Marina Yurieva, Phil Palmer, Sangram Keshari Sahu, and Olga Anczuków
Myocardial Biomechanics and the Consequent Differentially Expressed Genes of the Left Atrial Ligation Chick Embryonic Model of Hypoplastic Left Heart Syndrome., S Samaneh Lashkarinia, Wei Xuan Chan, Efthymios Motakis, Sheldon Ho, Hummaira Banu Siddiqui, Mervenur Coban, Bortecine Sevgin, Kerem Pekkan, and Choon Hwai Yap
Myostatin: A Skeletal Muscle Chalone., Se-Jin Lee
Natural Coevolution of Tumor and Immunoenvironment in Glioblastoma., Lingxiang Wu, Wei Wu, Junxia Zhang, Zheng Zhao, Liangyu Li, Mengyan Zhu, Min Wu, Fan Wu, Fengqi Zhou, Yuxin Du, Rui-Chao Chai, Wei Zhang, Xiaoguang Qiu, Quanzhong Liu, Ziyu Wang, Jie Li, Kening Li, Apeng Chen, Yinan Jiang, Xiangwei Xiao, Han Zou, Rashmi Srivastava, Tingting Zhang, Yun Cai, Yuan Liang, Bin Huang, Ruohan Zhang, Fan Lin, Lang Hu, Xiuxing Wang, Xu Qian, Sali Lv, Baoli Hu, Siyuan Zheng, Zhibin Hu, Hongbing Shen, Yongping You, Roel G W Verhaak, Tao Jiang, and Qianghu Wang
Neoteny in Mice: The effects of PDGFRα+ cell depletion during postnatal growth, Raheem Khadour
NetAct: a computational platform to construct core transcription factor regulatory networks using gene activity., Kenong Su, Ataur Katebi, Vivek Kohar, Benjamin Clauss, Danya Gordin, Zhaohui S Qin, Radha Krishna Murthy Karuturi, Sheng Li, and Mingyang Lu
Neurobehavioral deficits of mice expressing a low level of G127V mutant frataxin., Daniel Fil, Robbie L Conley, Aamir Zuberi, Cathleen Lutz, Terry Gemelli, Marek Napierala, and Jill S Napierala
Neuronal diversity can improve machine learning for physics and beyond., Anshul Choudhary, Anil Radhakrishnan, John F Lindner, Sudeshna Sinha, and William L Ditto
New insight into the causes, consequences, and correction of hematopoietic stem cell aging., Els Mansell, Dawn S Lin, Stephen J Loughran, Michael D Milsom, and Jennifer J. Trowbridge
New mouse models with hypomorphic SUMF1 variants mimic attenuated forms of multiple sulfatase deficiency., Nicolina Cristina Sorrentino, Maximiliano Presa, Sergio Attanasio, Vincenzo Cacace, Martina Sofia, Aamir Zuberi, Jennifer L Ryan, Somdatta Ray, Igor Petkovic, Karthikeyan Radhakrishnan, Lars Schlotawa, Andrea Ballabio, Cathleen Lutz, and Nicola Brunetti-Pierri
NOD-scid IL2rγnull mice lacking TLR4 support human immune system development and the study of human-specific innate immunity., Ken-Edwin Aryee, Leonard D. Shultz, Lisa M Burzenski, Dale L Greiner, and Michael A Brehm
Novel skewed usage of B-cell receptors in COVID-19 patients with various clinical presentations., Junpeng Ma, Han Bai, Tian Gong, Weikang Mao, Yijun Nie, Xuan Zhang, Yanyan Da, Xiaorui Wang, Hongyu Qin, Qiqi Zeng, Fang Hu, Xin Qi, Bingyin Shi, and Chengsheng Zhang
NUTMEG: A randomized phase II study of nivolumab and temozolomide versus temozolomide alone in newly diagnosed older patients with glioblastoma., Hao-Wen Sim, Luke Wachsmuth, Elizabeth H Barnes, Sonia Yip, Eng-Siew Koh, Merryn Hall, Ross Jennens, David M Ashley, Roel G W Verhaak, Amy B Heimberger, Mark A Rosenthal, Elizabeth J Hovey, Benjamin M Ellingson, Annette Tognela, Hui K Gan, Helen Wheeler, Michael Back, Kerrie L McDonald, Anne Long, Katharine Cuff, Stephen Begbie, Craig Gedye, Anna Mislang, Hien Le, Margaret O Johnson, Benjamin Y Kong, John R Simes, Zarnie Lwin, and Mustafa Khasraw
On the dependent recognition of some long zinc finger proteins., Zheng Zuo, Timothy Billings, Michael Walker, Petko M. Petkov, Polly M Fordyce, and Gary D Stormo
Ontologizing health systems data at scale: making translational discovery a reality., Tiffany J Callahan, Adrianne L Stefanski, Jordan M Wyrwa, Chenjie Zeng, Anna Ostropolets, Juan M Banda, William A Baumgartner, Richard D Boyce, Elena Casiraghi, Ben D Coleman, Janine H Collins, Sara J Deakyne Davies, James A Feinstein, Asiyah Y Lin, Blake Martin, Nicolas A Matentzoglu, Daniella Meeker, Justin Reese, Jessica Sinclair, Sanya B Taneja, Katy E Trinkley, Nicole A Vasilevsky, Andrew E Williams, Xingmin A Zhang, Joshua C Denny, Patrick B Ryan, George Hripcsak, Tellen D Bennett, Melissa A Haendel, Peter N Robinson, Lawrence E Hunter, and Michael G Kahn
Open drug discovery in Alzheimer's disease., Alison D Axtman, Paul E Brennan, Tristan Frappier-Brinton, Ranjita Betarbet, Gregory W. Carter, Haian Fu, Opher Gileadi, Anna K Greenwood, Karina Leal, Frank M Longo, Lara M Mangravite, Aled M Edwards, Allan I Levey, and The Emory-Sage-SGC TREAT-AD Center.
Optimizing the morphological characterization of single hippocampal neurons using Patch-seq, Annie Williams
Overview of triple negative breast cancer prognostic signatures in the context of data science-driven clinico-genomics research., Enrico Capobianco
Papillary thyroid cancer immune phenotypes via tumor-infiltrating lymphocyte spatial analysis., Myungwoo Nam, Woojung Yang, Hye Sung Kim, Jewel Park, Gahee Park, Sukjun Kim, Sanghoon Song, Chan-Young Ock, Victor G Wang, Jeffrey Chuang, and Young Kwang Chae
Pathology of genetically engineered and other mutant mice, John P Sundberg, Peter Vogel, and Jerrold M. Ward
PDCM Finder: an open global research platform for patient-derived cancer models., Zinaida Perova, Mauricio Martinez, Tushar Mandloi, Federico Lopez Gomez, Csaba Halmagyi, Alex Follette, Jeremy Mason, Steven Neuhauser, Dale A. Begley, Debra M Krupke, Carol J Bult, Helen Parkinson, and Tudor Groza
Performance Modeling of Scalable Resource Allocations with the Imperial PEPA Compiler, William S. Sanders, Srishti Srivastava, and Ionana Banicescu
Perivascular cells induce microglial phagocytic states and synaptic engulfment via SPP1 in mouse models of Alzheimer's disease., Sebastiaan De Schepper, Judy Z Ge, Gerard Crowley, Laís S S Ferreira, Dylan Garceau, Christina E Toomey, Dimitra Sokolova, Javier Rueda-Carrasco, Sun-Hye Shin, Jung-Seok Kim, Thomas Childs, Tammaryn Lashley, Jemima J Burden, Michael Sasner, Carlo Sala Frigerio, Steffen Jung, and Soyon Hong
Phenopacket-tools: Building and validating GA4GH Phenopackets., Daniel Danis, Julius O B Jacobsen, Alex H Wagner, Tudor Groza, Martha A Beckwith, Lauren Rekerle, Leigh Carmody, Justin Reese, Harshad Hegde, Markus S Ladewig, Berthold Seitz, Monica Munoz-Torres, Nomi L Harris, Jordi Rambla, Michael Baudis, Christopher J Mungall, Melissa A Haendel, and Peter N Robinson
Phenotype-aware prioritisation of rare Mendelian disease variants., Catherine Kelly, Anita Szabo, Nikolas Pontikos, Gavin Arno, Peter N Robinson, Jules O B Jacobsen, Damian Smedley, and Valentina Cipriani
Phenotypic trait variation in the North American Tragopogon allopolyploid complex., Ingrid E Jordon-Thaden, Jonathan P Spoelhof, Lyderson Facio Viccini, Joseph Combs, Francisco Gomez, Imari Walker, Douglas E Soltis, and Pamela S Soltis
Phenotyping mice with skin, hair, or nail abnormalities: A systematic approach and methodologies from simple to complex., John P Sundberg and Robert H Rice
Pkhd1, Chaozhe Yang, Naoe Harafuji, Ljubica Caldovic, Weiying Yu, Ravindra Boddu, Surajit Bhattacharya, Hayk Barseghyan, Heather Gordish-Dressman, Oded Foreman, Zsuzsa Bebok, Eva M Eicher, and Lisa M Guay-Woodford
Plasticity Requirements in IL-to-BLA Circuitry During Extinction Learning, Allison Velie
PLS3 missense variants affecting the actin-binding domains cause X-linked congenital diaphragmatic hernia and body-wall defects., Florence Petit, Mauro Longoni, Julie Wells, Richard S. Maser, Eric L Bogenschutz, Matthew J Dysart, Hannah T M Contreras, Frederic Frénois, Barbara R Pober, Robin D Clark, Philip F Giampietro, Hilger H Ropers, Hao Hu, Maria Loscertales, Richard Wagner, Xingbin Ai, Harrison Brand, Anne-Sophie Jourdain, Marie-Ange Delrue, Brigitte Gilbert-Dussardier, Louise Devisme, Boris Keren, David J McCulley, Lu Qiao, Rebecca Hernan, Julia Wynn, Tiana M Scott, Daniel G Calame, Zeynep Coban-Akdemir, Patricia Hernandez, Andres Hernandez-Garcia, Hagith Yonath, James R Lupski, Yufeng Shen, Wendy K Chung, Daryl A Scott, Carol J Bult, Patricia K Donahoe, and Frances A High
'Poisoning' of the transcriptome by ultraconserved elements., Nathan Leclair and Olga Anczuków
Polygenic influences on the behavioral effects of alcohol withdrawal in a mixed-ancestry population from the collaborative study on the genetics of alcoholism (COGA)., Chelsie E Benca-Bachman, Jason A. Bubier, Rameez A Syed, Pamela N Romero Villela, and Rohan H C Palmer
Possibilities and pitfalls of practitioners in trying to apply change theory as viewed through the lens of Reinholz, White, and Andrews “Change theory in STEM higher education: a systematic review, Melissa Elben-Zayas, Laura J Muller, and Janet Russell
Post-exertional malaise among people with long COVID compared to myalgic encephalomyelitis/chronic fatigue syndrome (ME/CFS)., Suzanne D Vernon, Megan Hartle, Karen Sullivan, Jennifer Bell, Saeed Abbaszadeh, Derya Unutmaz, and Lucinda Bateman
Precision mouse models of Yars/dominant intermediate Charcot-Marie-Tooth disease type C and Sptlc1/hereditary sensory and autonomic neuropathy type 1., Timothy J Hines, Abigail L D Tadenev, Museer A Lone, Courtney L Hatton, Inseyah Bagasrawala, Morgane G. Stum, Kathy E Miers, Thorsten Hornemann, and Robert W. Burgess
Predictable Fluctuations in Excitatory Synaptic Strength Due to Natural Variation in Presynaptic Firing Rate., Naixin Ren, Ganchao Wei, Abed Ghanbari, and Ian H Stevenson
Predictive models of long COVID., Blessy Antony, Hannah Blau, Elena Casiraghi, Johanna J Loomba, Tiffany J Callahan, Bryan J Laraway, Kenneth J Wilkins, Corneliu C Antonescu, Giorgio Valentini, Andrew E Williams, Peter N Robinson, Justin T Reese, T M Murali, and on behalf of the N3C consortium.
Prenatal phenotyping: A community effort to enhance the Human Phenotype Ontology., Ferdinand Dhombres, Patricia Morgan, Bimal P Chaudhari, Isabel Filges, Teresa N Sparks, Pablo Lapunzina, Tony Roscioli, Umber Agarwal, Shagun Aggarwal, Claire Beneteau, Pilar Cacheiro, Leigh Carmody, Sophie Collardeau-Frachon, Esther A Dempsey, Andreas Dufke, Michael Henri Duyzend, Mirna El Ghosh, Jessica L Giordano, Ragnhild Glad, Ieva Grinfelde, Dominic G Iliescu, Markus S Ladewig, Monica C Munoz-Torres, Marzia Pollazzon, Francesca Clementina Radio, Carlota Rodo, Raquel Gouveia Silva, Damian Smedley, Jagadish Chandrabose Sundaramurthi, Sabrina Toro, Irene Valenzuela, Nicole A Vasilevsky, Ronald J Wapner, Roni Zemet, Melissa A Haendel, and Peter N Robinson
Priorities to Promote Participant Engagement in the Participant Engagement and Cancer Genome Sequencing (PE-CGS) Network., Anne Lr Schuster, Norah L Crossnohere, Melinda Bachini, Cindy K Blair, John D Carpten, Elizabeth B Claus, Graham A Colditz, Li Ding, Bettina F Drake, Ryan C Fields, Katherine A Janeway, Bethany M Kwan, Heinz-Josef Lenz, Qin Ma, Shiraz I Mishra, Electra D Paskett, Timothy R Rebbeck, Charité Ricker, Mariana C Stern, Andrew L Sussman, Jessica C Tiner, Jeffrey M Trent, Roel G W Verhaak, Nikhil Wagle, Cheryl Willman, and John Fp Bridges
Profiling Genomic Diversity in a New Wild Mouse Strain Resource, Gabriel McMillen
Profiling the transposable element landscape in a new wild mouse resource, Sirohi Kumar
Promoting validation and cross-phylogenetic integration in model organism research., Keith C Cheng, Rebecca D Burdine, Mary E Dickinson, Stephen C Ekker, Alex Y Lin, K C Kent Lloyd, Cathleen Lutz, Calum A MacRae, John H Morrison, David H O'Connor, John H Postlethwait, Crystal D Rogers, Susan Sanchez, Julie H Simpson, William S Talbot, Douglas C Wallace, Jill M Weimer, and Hugo J Bellen
Protein coding variation in the J:ARC and J:DO outbred laboratory mouse stocks provides a molecular basis for distinct research applications., Belinda Cornes, Carolyn Paisie, Emily Swanzey, Peter D Fields, Andrew Schile, Kelly Brackett, Laura G Reinholdt, and Anuj Srivastava
Pten inhibition dedifferentiates long-distance axon-regenerating intrinsically photosensitive retinal ganglion cells and upregulates mitochondria-associated Dynlt1a and Lars2., Bruce A Rheaume, Jian Xing, Agnieszka Lukomska, William C Theune, Ashiti Damania, Greg Sjogren, and Ephraim F Trakhtenberg
PTS is activated by ATF4 and promotes lung adenocarcinoma development via the Wnt pathway, Wei Ma, Chao Wang, Ruzhen Li, Zhaohui Han, Yuanzhu Jiang, Xiangwei Zhang, Duilio Divisi, Enrico Capobianco, Lin Zhang, and Wei Dong
Quantifying the spatial relationship between PORCN and JAG1 in the Mouse Cochlea, Emily Burt
Rapid Evolution of the Fine-scale Recombination Landscape in Wild House Mouse (Mus musculus) Populations., Lydia K Wooldridge and Beth L Dumont
[Rare-disease data standards]., Peter N Robinson and Holm Graessner
Rate of tau propagation is a heritable disease trait in genetically diverse mouse strains., Lindsay A Welikovitch, Simon Dujardin, Amy R Dunn, Analiese R Fernandes, Anita Khasnavis, Lori B Chibnik, Catherine Kaczorowski, and Bradley T Hyman
Reduction in GABAB on glia induce Alzheimer's disease related changes., Amanda M Leisgang Osse, Ravi S Pandey, Ryan A Wirt, Andrew A Ortiz, Arnold Salazar, Michael Kimmich, Erin N Toledano Strom, Adrian Oblak, Bruce Lamb, James M Hyman, Gregory W. Carter, and Jefferson Kinney
Reduction of Paraoxonase Expression Followed by Inactivation across Independent Semiaquatic Mammals Suggests Stepwise Path to Pseudogenization., Allie M Graham, Jerrica M Jamison, Marisol Bustos, Charlotte Cournoyer, Alexa Michaels, Jason S Presnell, Rebecca Richter, Daniel E Crocker, Ari Fustukjian, Margaret E Hunter, Lorrie D Rea, Judit Marsillach, Clement E Furlong, Wynn K Meyer, and Nathan L Clark
Regulation of protein abundance in genetically diverse mouse populations., Gregory R Keele, Tian Zhang, Duy T. Pham, Matthew J Vincent, Timothy A Bell, Pablo Hock, Ginger D Shaw, Joao A Paulo, Steven C. Munger, Fernando Pardo-Manuel de Villena, Martin T Ferris, Steven P Gygi, and Gary Churchill
Repeated dosing with cocaine produces strain-dependent effects on responding for conditioned reinforcement in Collaborative Cross mice., Lauren S Bailey, Jared R Bagley, James D Wherry, Elissa J Chesler, Anushree Karkhanis, James D Jentsch, and Lisa M Tarantino
Reproductive genomics of the mouse: implications for human fertility and infertility., Alexis Garretson, Beth L Dumont, and Mary Ann Handel
Research Note: Association of single nucleotide polymorphism of AKT3 with egg production traits in White Muscovy ducks (Cairina moschata)., Semiu Folaniyi Bello, Haiping Xu, Kan Li, Lijin Guo, Siyu Zhang, Ridwan Olawale Ahmed, Endashaw Jebessa Bekele, Ming Zheng, Mingjian Xian, Bahareldin Ali Abdalla, Adeniyi Charles Adeola, Adeyinka Abiola Adetula, Raman Akinyanju Lawal, Weijian Zhu, Dexiang Zhang, Xiquan Zhang, Congliang Ji, and Qinghua Nie
Resolution of structural variation in diverse mouse genomes reveals chromatin remodeling due to transposable elements., Ardian Ferraj, Peter A Audano, Parithi Balachandran, Anne M Czechanski, Jacob I Flores, Alexander A Radecki, Varun Mosur, David S Gordon, Isha A Walawalkar, Evan E Eichler, Laura G Reinholdt, and Christine R Beck
RGS12 polarizes the GPSM2-GNAI complex to organize and elongate stereocilia in sensory hair cells., Anil Akturk, Matthew Day, and Basile Tarchini
R-Loop Formation in Meiosis: Roles in Meiotic Transcription-Associated DNA Damage., Yasuhiro Fujiwara, Mary Ann Handel, and Yuki Okada
RNA splicing dysregulation and the hallmarks of cancer., Robert K Bradley and Olga Anczuków
Robust enhancer-gene regulation identified by single-cell transcriptomes and epigenomes., Fangming Xie, Ethan J Armand, Zizhen Yao, Hanqing Liu, Anna Bartlett, M Margarita Behrens, Yang Eric Li, Jacinta D Lucero, Chongyuan Luo, Joseph R Nery, Antonio Pinto-Duarte, Olivier B Poirion, Sebastian Preissl, Angeline C Rivkin, Bosiljka Tasic, Hongkui Zeng, Bing Ren, Joseph R Ecker, and Eran A Mukamel
Robustness of single-cell RNA-seq for identifying differentially expressed genes., Yong Liu, Jing Huang, Rajan Pandey, Pengyuan Liu, Bhavika Therani, Qiongzi Qiu, Sridhar Rao, Aron M Geurts, Allen W Cowley, Andrew S Greene, and Mingyu Liang
Role of Flial Cells in the Arcuate Nucleus of the Hypothalamus in High-Fat Diet Consuming Mice, Hunter Samuel
Role of srGAP3 protein stability in mediating voluntary cocaine abuse in Gridlock'd mutant mice, Elaina Cote
Sample multiplexing-based targeted pathway proteomics with real-time analytics reveals the impact of genetic variation on protein expression., Qing Yu, Xinyue Liu, Mark P Keller, Jose Navarrete-Perea, Tian Zhang, Sipei Fu, Laura P Vaites, Steven R Shuken, Ernst Schmid, Gregory R Keele, Jiaming Li, Edward L Huttlin, Edrees H Rashan, Judith Simcox, Gary Churchill, Devin K Schweppe, Alan D Attie, Joao A Paulo, and Steven P Gygi
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SEESAW: detecting isoform-level allelic imbalance accounting for inferential uncertainty., Euphy Y Wu, Noor P Singh, Kwangbom Choi, Mohsen Zakeri, Matthew J Vincent, Gary Churchill, Cheryl L Ackert-Bicknell, Rob Patro, and Michael I Love
Sequencing and assembling bear genomes: the bare necessities., Courtney Willey and Ron Korstanje
Seven days in the life cycle of Homo sapiens., Martin Pera
Seven naturally variant loci serve as genetic modifiers of Lamc2jeb induced non-Herlitz junctional Epidermolysis Bullosa in mice., Thomas J. Sproule, Vivek M. Philip, Nabig A Chaudhry, Derry C. Roopenian, and John P Sundberg
Sex- and age-dependent genetics of longevity in a heterogeneous mouse population., Maroun Bou Sleiman, Suheeta Roy, Arwen W Gao, Marie C Sadler, Giacomo V G von Alvensleben, Hao Li, Saunak Sen, David E Harrison, James F Nelson, Randy Strong, Richard A Miller, Zoltán Kutalik, Robert W Williams, and Johan Auwerx
Sex and molecular differences in cardiovascular parameters at peak influenza disease in mice., Brigitte E Martin, Erin B Taylor, Esinam M Attipoe, Wenjie Wu, David E Stec, Kurt C Showmaker, and Michael R Garrett
Sex-specific role of myostatin signaling in neonatal muscle growth, denervation atrophy, and neuromuscular contractures., Marianne E Emmert, Parul Aggarwal, Kritton Shay-Winkler, Se-Jin Lee, Qingnian Goh, and Roger Cornwall
Simultaneous evaluation of treatment efficacy and toxicity for bispecific T-cell engager therapeutics in a humanized mouse model., Jiwon Yang, Jing Jiao, Kyle Draheim, Guoxiang Yang, Hongyuan Yang, Li-Chin Yao, Leonard D. Shultz, Dale L Greiner, Deepa Rajagopal, Sandrine Vessillier, Curtis C Maier, Sunish Mohanan, Danying Cai, Mingshan Cheng, Michael A Brehm, and James G. Keck
Simultaneous multifunctional transcriptome engineering by CRISPR RNA scaffold., Zukai Liu, Nathaniel L. Jillette, Paul Robson, and Albert Cheng
Single-Cell RNA Sequencing Reveals Molecular Features of Heterogeneity in the Murine Retinal Pigment Epithelium., Ravi S Pandey, Mark P. Krebs, Mohan Bolisetty, Jeremy R. Charette, Juergen K. Naggert, Paul Robson, Patsy M. Nishina, and Gregory W. Carter
Single-Cell Transcriptome Analysis Defines Expression of Kabuki Syndrome-Associated KMT2D Targets and Interacting Partners., Badam Enkhmandakh, Paul Robson, Pujan Joshi, Anushree Vijaykumar, Dong-Guk Shin, Mina Mina, and Dashzeveg Bayarsaihan
Single-cell transcriptomics defines Dot1L interacting partners and downstream target genes in the mouse molar dental pulp., Rosa Guzzo, Badam Enkhmandakh, Timothy Becker, Pujan Joshi, Paul Robson, Anushree Vijaykumar, Mina Mina, Dong-Guk Shin, and Dashzeveg Bayarsaihan
Single-nucleus Transcriptome Profiling of Cancer-associated Fibroblasts in Glioma, Andreas Stephanou
Skin Extracellular Matrix Breakdown Following Paclitaxel Therapy in Patients with Chemotherapy-Induced Peripheral Neuropathy., Nathan P Staff, Sybil C Hrstka, Surendra Dasari, Enrico Capobianco, and Sandra Rieger
Skin, Hair, and Nails, John P Sundberg, Lloyd E. King Jr, and Raoul V. Kuiper
Skin microbiome attributes associate with biophysical skin ageing., Wei Zhou, Elizabeth Fleming, Guylaine Legendre, Lauriane Roux, Julie Latreille, Gaëlle Gendronneau, Sandra Forestier, and Julia Oh
Spatial mapping of cellular senescence: emerging challenges and opportunities., Aditi U Gurkar, Akos A Gerencser, Ana L Mora, Andrew C Nelson, Anru R Zhang, Anthony B Lagnado, Archibald Enninful, Christopher Benz, David Furman, Delphine Beaulieu, Diana Jurk, Elizabeth L Thompson, Fei Wu, Fernanda Rodriguez, Grant Barthel, Hao Chen, Hemali Phatnani, Indra Heckenbach, Jeffrey Chuang, Jeremy Horrell, Joana Petrescu, Jonathan K Alder, Jun Hee Lee, Laura J Niedernhofer, Manoj Kumar, Melanie Königshoff, Marta Bueno, Miiko Sokka, Morten Scheibye-Knudsen, Nicola Neretti, Oliver Eickelberg, Peter D Adams, Qianjiang Hu, Quan Zhu, Rebecca A Porritt, Runze Dong, Samuel Peters, Stella Victorelli, Thomas Pengo, Timur Khaliullin, Vidyani Suryadevara, Xiaonan Fu, Ziv Bar-Joseph, Zhicheng Ji, and João F Passos
Spatiotemporally organized immunomodulatory response to SARS-CoV-2 virus in primary human broncho-alveolar epithelia., Diana Cadena, Sonia Jangra, Marina Yurieva, Jan Martinek, Megan Callender, Matthew Coxe, Angela Choi, Juan García-Bernalt Diego, Jianan Lin, Te-Chia Wu, Florentina Marches, Damien Chaussabel, Peter Yu, Andrew Salner, Gabrielle Aucello, Jonathan Koff, Briana Hudson, Sarah E Church, Kara Gorman, Esperanza Anguiano, Adolfo García-Sastre, Adam Williams, Michael Schotsaert, and Karolina Palucka
Statistical Learning Methods to Identify Nonwear Periods From Accelerometer Data, Sahrej Randhawa, Manoj Sharma, Madalina Fiterau, Jorge A. Banda, Farish Haydel, Kristopher Kapphahn, Donna Matheson, Hyatt Moore IV, Robyn L Ball, Clete Kushida, Scott Delp, Dennis P. Wall, Thomas Robinson, and Manisha Desai
Strains to go: interactions of the skin microbiome beyond its species., Ryan Caldwell, Wei Zhou, and Julia Oh
Subclonal evolution and expansion of spatially distinct THY1-positive cells is associated with recurrence in glioblastoma., Wajd N Al-Holou, Hanxiao Wang, Visweswaran Ravikumar, Sunita Shankar, Morgan Oneka, Ziad Fehmi, Roel G W Verhaak, Hoon Kim, Drew Pratt, Sandra Camelo-Piragua, Corey Speers, Daniel R Wahl, Todd Hollon, Oren Sagher, Jason A Heth, Karin M Muraszko, Theodore S Lawrence, Ana C de Carvalho, Tom Mikkelsen, Arvind Rao, and Alnawaz Rehemtulla
SVision: a deep learning approach to resolve complex structural variants., Jiadong Lin, Songbo Wang, Peter A Audano, Deyu Meng, Jacob I Flores, Walter Kosters, Xiaofei Yang, Peng Jia, Tobias Marschall, Christine R Beck, and Kai Ye
Targeting gene fusions as a therapeutic approach in pediatric cancers, Elisa Saint-Denis
Targeting SARS-CoV-2 infection through CAR-T-like bispecific T cell engagers incorporating ACE2., Mikail Dogan, Lina Kozhaya, Lindsey Placek, Fatih Karabacak, Mesut Yigit, and Derya Unutmaz
Taxonomic assessment of two wild house mouse subspecies using whole-genome sequencing., Raman Akinyanju Lawal, Verity L Mathis, Mary Barter, Jeremy R. Charette, Alexis Garretson, and Beth L Dumont
Temporal Progression of Aortic Valve Pathogenesis in a Mouse Model of Osteogenesis Imperfecta., Kaitlyn Thatcher, Carol R Mattern, Daniel Chaparro, Veronica Goveas, Michael R McDermott, Jessica Fulton, Joshua D Hutcheson, Brian Hoffmann, and Joy Lincoln
Testing the Extent a Chemotherapy is Influenced by Host Genetics, Marianna Ward
The 677C > T variant in methylenetetrahydrofolate reductase causes morphological and functional cerebrovascular deficits in mice, Alaina M Reagan, Karen E Christensen, Leah C. Graham, Amanda A Bedwell, Kierra Eldridge, Rachael Speedy, Lucas L Figueiredo, Scott C Persohn, Teodoro Bottiglieri, Kwangsik Nho, Michael Sasner, Paul R Territo, Rima Rozen, and Gareth R Howell
The case for standardizing gene nomenclature in vertebrates., Fiona M McCarthy, Tamsin E M Jones, Anne E Kwitek, Cynthia Smith, Peter D Vize, Monte Westerfield, and Elspeth A Bruford
The collaborative cross strains and their founders vary widely in cocaine-induced behavioral sensitization., Sarah A Schoenrock, Leona H. Gagnon, Ashley A Olson, Michael Leonardo, Vivek M. Philip, Hao He, Laura G. Reinholdt, S J Sukoff Rizzo, James D Jentsch, Elissa J Chesler, and Lisa M Tarantino
The consequences of recurrent genetic and epigenetic variants in human pluripotent stem cells., Peter W Andrews, Ivana Barbaric, Nissim Benvenisty, Jonathan S Draper, Tenneille Ludwig, Florian T Merkle, Yoji Sato, Claudia Spits, Glyn N Stacey, Haoyi Wang, and Martin Pera
The dark kinase STK32A regulates hair cell planar polarity opposite of EMX2 in the developing mouse inner ear., Shihai Jia, Evan M Ratzan, Ellison J Goodrich, Raisa Abrar, Luke Heiland, Basile Tarchini, and Michael R Deans
The Effect of Allelic Variation on Genetic Recombination and Oocyte Quality, Priya Kosana
The Effect of Genetic Background on Charcot-Marie-Tooth Histopathology in Mice, Lily Moy
The effect of the Arg1956Trp mutation in the IQ3 domain of MYO15A on stereocilia formation and hearing loss, Lilly Krupp
The Effects of Genetic Variation on Acute Myeloid Leukemia Growth in Mice, Dan Bernstein
The Effects of Heterochromatin Formation on 3-D Genome Contacts in Mouse Embryonic Stem Cells, Brooke Wilson
The Environmental Conditions, Treatments, and Exposures Ontology (ECTO): connecting toxicology and exposure to human health and beyond., Lauren E Chan, Anne E Thessen, William D Duncan, Nicolas Matentzoglu, Charles Schmitt, Cynthia J Grondin, Nicole Vasilevsky, Julie A McMurry, Peter N Robinson, Christopher J Mungall, and Melissa A Haendel
The Expression of ZFHX4 Protein in Developing Mouse Lungs and Lung Adenocarcinoma, Tina Li
The functional and evolutionary impacts of human-specific deletions in conserved elements., James R Xue, Ava Mackay-Smith, Kousuke Mouri, Meilin Fernandez Garcia, Michael X Dong, Jared F Akers, Mark Noble, Xue Li, Zoonomia Consortium, Kerstin Lindblad-Toh, Elinor K Karlsson, James P Noonan, Terence D Capellini, Kristen J Brennand, Ryan Tewhey, Pardis C Sabeti, and Steven K Reilly
The Fungal Microbiome of the Upper Airway Is Associated With Future Loss of Asthma Control and Exacerbation Among Children With Asthma., Hanshu Yuan, Zhongmao Liu, Jinhong Dong, Leonard B Bacharier, Daniel Jackson, David Mauger, Homer Boushey, Mario Castro, Juliana Durack, Yvonne J Huang, Robert F Lemanske, Gregory A Storch, George M. Weinstock, Kristine Wylie, Ronina Covar, Anne M Fitzpatrick, Wanda Phipatanakul, Rachel G Robison, Avraham Beigelman, and Yanjiao Zhou
The Genetics and Evolution of the Thyroid System, C K. Chai
The Immune Signatures data resource, a compendium of systems vaccinology datasets., Joann Diray-Arce, Helen E R Miller, Evan Henrich, Bram Gerritsen, Matthew P Mulè, Slim Fourati, Jeremy Gygi, Thomas Hagan, Lewis Tomalin, Dmitry Rychkov, Dmitri Kazmin, Daniel G Chawla, Hailong Meng, Patrick Dunn, John Campbell, the Human Immunology Project Consortium (HIPC), Minnie Sarwal, John S Tsang, Ofer Levy, Bali Pulendran, Rafick Sekaly, Aris Floratos, Raphael Gottardo, Steven H Kleinstein, and Mayte Suárez-Fariñas
The impact of the Y chromosome on the reproductive fitness of male wild-derived mice, Keona Banks
The impact of vitamin D on cancer: A mini review., Gerbenn Seraphin, Sandra Rieger, Martin Hewison, Enrico Capobianco, and Thomas S Lisse
The Impact of Zbtb7a and Zbtb7b Loss in Acute Myeloid Leukemia Drug Resistance, Meryl McKenna
The Maine Cancer Genomics Initiative: Implementing a Community Cancer Genomics Program Across an Entire Rural State., Jens Rueter, Eric C Anderson, Leah C. Graham, Andrey Antov, Petra Helbig, Lory Gaitor, Jennifer Bourne, Emily A Edelman, Kate Reed, Honey V Reddi, Susan Mockus, John DiPalazzo, Christine Lu-Emerson, Roger Inhorn, Sarah J Sinclair, Christian A Thomas, Philip L Brooks, Karen Rasmussen, Paul Han, Edison Liu, and MCGI Working Group
The microbial community dynamics of cocaine sensitization in two behaviorally divergent strains of collaborative cross mice., Thi Dong Binh Tran, Christian Monroy Hernandez, Hoan Nguyen, Susan Wright, Center for Systems Neurogenetics of Addiction, Lisa M Tarantino, Elissa J Chesler, George M. Weinstock, Yanjiao Zhou, and Jason A. Bubier
The Milky Way Project: Multi-omic Clocks of Biological Age and Rates of Aging, Matthew Luchs
The Mouse Models of Human Cancer database (MMHCdb)., Dale A. Begley, Debra M Krupke, John P Sundberg, Emily L Jocoy, Joel E Richardson, Steven Neuhauser, and Carol J Bult
The Mouse Online: Open Mouse Biology and Pathology Data Resources for Biomedical Research, Dale A. Begley, Paul N. Schofield, and John P Sundberg
The Ontology of Biological Attributes (OBA)-computational traits for the life sciences., Ray Stefancsik, James P Balhoff, Meghan A Balk, Robyn L Ball, Susan M. Bello, Anita R Caron, Elissa J Chesler, Vinicius de Souza, Sarah Gehrke, Melissa Haendel, Laura W Harris, Nomi L Harris, Arwa Ibrahim, Sebastian Koehler, Nicolas Matentzoglu, Julie A McMurry, Christopher J Mungall, Monica C Munoz-Torres, Tim Putman, Peter N Robinson, Damian Smedley, Elliot Sollis, Anne E Thessen, Nicole Vasilevsky, David O Walton, and David Osumi-Sutherland
The Precision Toxicology initiative., PrecisionTox Consortium
The RNA-binding protein FUS/TLS interacts with SPO11 and PRDM9 and localize at meiotic recombination hotspots., Teresa Giannattasio, Erika Testa, Ramona Palombo, Lidia Chellini, Flavia Franceschini, Álvaro Crevenna, Petko M. Petkov, Maria Paola Paronetto, and Marco Barchi
The role of EPASI, an oxygen-sensing transcription facor, in trophoblast differentiation, Braeden Rose
The Role of FAS Receptor Methylation in Osteosarcoma Metastasis., Jiayi M Sun, Wing-Yuk Chow, Gufeng Xu, M John Hicks, Manjula Nakka, Jianhe Shen, Patrick Ks Ng, Aaron M Taylor, Alexander Yu, Jason E Farrar, Donald A Barkauskas, Richard Gorlick, Jaime M Guidry Auvil, Daniela Gerhard, Paul Meltzer, Rudy Guerra, Tsz-Kwong Man, Ching C Lau, and On Behalf Of The Target Osteosarcoma Consortium
The role of Oit3 in embryonic development, Lenka Slamova
The RSNA Cervical Spine Fracture CT Dataset., Hui Ming Lin, Errol Colak, Tyler Richards, Felipe C Kitamura, Luciano M Prevedello, Jason Talbott, Robyn L Ball, Ekim Gumeler, Kristen W Yeom, Mohammad Hamghalam, Amber L Simpson, Jasna Strika, Deniz Bulja, Salita Angkurawaranon, Almudena Pérez-Lara, María Isabel Gómez-Alonso, Johanna Ortiz Jiménez, Jacob J Peoples, Meng Law, Hakan Dogan, Emre Altinmakas, Ayda Youssef, Yasser Mahfouz, Jayashree Kalpathy-Cramer, Adam E Flanders, and RSNA-ASSR-ASNRAnnotatorsandtheDataset Curation Contributors
The Search, The Jackson Laboratory
The Search, The Jackson Laboratory
The Search, The Jackson Laboratory
The Search, The Jackson Laboratory
The Search, The Jackson Laboratory
The Search, The Jackson Laboratory
The Search, The Jackson Laboratory
The Search, The Jackson Laboratory
The Search, The Jackson Laboratory
The Search, The Jackson Laboratory
The Search, The Jackson Laboratory
The Search, The Jackson Laboratory
The Search, The Jackson Laboratory
The Search, The Jackson Laboratory
The Search, The Jackson Laboratory
The Search, The Jackson Laboratory
The Search, The Jackson Laboratory
The Search, The Jackson Laboratory
The Search, The Jackson Laboratory
The Search, The Jackson Laboratory
The Search, The Jackson Laboratory
The Search, The Jackson Laboratory
The Search, The Jackson Laboratory
The Search, The Jackson Laboratory
The Search, The Jackson Laboratory
The Search, The Jackson Laboratory
The spontaneous mouse mutant low set ears (Lse) is caused by tandem duplication of Fgf3 and Fgf4., Alana Luzzio, Sarah Edie, Kristina Palmer, L Brianna Caddle, Rachel Urban, Leslie Goodwin, Ian C Welsh, Laura G Reinholdt, David E. Bergstrom, Timothy C Cox, Leah Rae Donahue, and Stephen A. Murray
The stability of the myelinating oligodendrocyte transcriptome is regulated by the nuclear lamina., Mathilde Pruvost, Julia Patzig, Camila Yattah, Ipek Selcen, Marylens Hernandez, Hye-Jin Park, Sarah Moyon, Shibo Liu, Malia S Morioka, Lindsay S. Shopland, Osama Al-Dalahmah, Jaroslav Bendl, John F Fullard, Panos Roussos, James Goldman, Ye He, Jeffrey L Dupree, and Patrizia Casaccia
The study of selection signature and its applications on identification of candidate genes using whole genome sequencing data in chicken-a review., Semiu Folaniyi Bello, Raman Akinyanju Lawal, Adeniyi Charles Adeola, and Qinghua Nie
The Th1/Tfh-like biased responses elicited by the rASP-1 innate adjuvant are dependent on TRIF and Type I IFN receptor pathways., Parakkal Jovvian George, Radu Marches, Djamel Nehar-Belaid, Jacques Banchereau, and Sara Lustigman
The trouble with triples: Examining the impact of measurement error in mediation analysis., Madeleine S Gastonguay, Gregory R Keele, and Gary Churchill
TMEM161B modulates radial glial scaffolding in neocortical development., Lu Wang, Caleb Heffner, Keng Ioi Vong, Chelsea Barrows, Yoo-Jin Ha, Sangmoon Lee, Pablo Lara-Gonzalez, Ishani Jhamb, Dennis Van Der Meer, Robert Loughnan, Nadine Parker, David Sievert, Swapnil Mittal, Mahmoud Y Issa, Ole A Andreassen, Anders Dale, William B Dobyns, Maha S Zaki, Stephen A Murray, and Joseph G Gleeson
TNBC Therapeutics Based on Combination of Fusarochromanone with EGFR Inhibitors., Natalie Carroll, Reneau Youngblood, Alena Smith, Ana-Maria Dragoi, Brian A Salvatore, and Elahe Mahdavian
Trackable and scalable LC-MS metabolomics data processing using asari., Shuzhao Li, Amnah Siddiqa, Maheshwor Thapa, Yuanye Chi, and Shujian Zheng
Transcriptional activation of Jun and Fos members of the AP-1 complex is a conserved signature of immune aging that contributes to inflammaging., Emin Onur Karakaslar, Neerja Katiyar, Muneer G. Hasham, Ahrim Youn, Siddhartha Sharma, Cheng-Han Chung, Radu Marches, Ron Korstanje, Jacques Banchereau, and Duygu Ucar
Transcriptional and Translational Dynamics of Zika and Dengue Virus Infection., Kamini Singh, Maria Guadalupe Martinez, Jianan Lin, James Gregory, Trang Uyen Nguyen, Rawan Abdelaal, Kristy Kang, Kristen Brennand, Arnold Grünweller, Zhengqing Ouyang, Hemali Phatnani, Margaret Kielian, and Hans-Guido Wendel
Transcriptomic responses in the blood and sputum of cigarette smokers compared to e-cigarette vapers., Mario F Perez, Marina Yurieva, Spandana Poddutoori, Eric M Mortensen, Laura E Crotty Alexander, and Adam Williams
Translating Data Science Results into Precision Oncology Decisions: A Mini Review., Enrico Capobianco and Marco Dominietto
Translocation and metabolism of tricresyl phosphate in rice and microbiome system: Isomer-specific processes and overlooked metabolites., Yuanyuan Yu, Jiahui Huang, Ling Jin, Miao Yu, Xiaolong Yu, Xifen Zhu, Jianteng Sun, and Lizhong Zhu
Translocation detection from Hi-C data via scan statistics., Anthony Cheng, Disheng Mao, Yuping Zhang, Joseph Glaz, and Zhengqing Ouyang
Transposable element-mediated rearrangements are prevalent in human genomes., Parithi Balachandran, Isha A Walawalkar, Jacob I Flores, Jacob N Dayton, Peter A Audano, and Christine R Beck
Trisomy 21 induces pericentrosomal crowding delaying primary ciliogenesis and mouse cerebellar development., Cayla E Jewett, Bailey L McCurdy, Eileen T O'Toole, Alexander J Stemm-Wolf, Katherine S Given, Carrie H Lin, Valerie Olsen, Whitney Martin, Laura G Reinholdt, Joaquín M Espinosa, Kelly D Sullivan, Wendy B Macklin, Rytis Prekeris, and Chad G Pearson
tRNA Dysregulation in Neurodevelopmental and Neurodegenerative Diseases., Robert W. Burgess and Erik Storkebaum
Two new mouse models of Gjb1-associated Charcot-Marie-Tooth disease type 1X., A L D Tadenev, C L Hatton, B Pattavina, T Mullins, Robert Schneider, Laurent P. Bogdanik, and Robert W. Burgess
Uncovering transcriptional changesrelated to cisplatin treatment andmixing of TNBC subclones usingsingle-cell RNA sequencing, Shadae Nicholas
Unraveling the Role of Glycolysis-Derived Pyruvate in Modulation of TIM-3 Expression in Cancer, Chloe Ledford
Urban-Rural and Socioeconomic Differences in Patient Knowledge and Perceptions of Genomic Tumor Testing., Jessica F DiBiase, Elizabeth Scharnetzki, Emily A Edelman, F Lee Lucas, Petra Helbig, Jens Rueter, Paul K J Han, Erika Ziller, Elizabeth A Jacobs, and Eric C Anderson
Using Machine-Vision to Quantify Mouse Behavior, Joseph DuPree
Using Modified Bacterial Artificial Chromosomes to Develop Transgenic Mouse Models Containing Human Genes with Disease Causing Mutations, Srilekha Kadimi
Using the Collaborative Cross to identify putative gamete compatibility genes, Clare Mulcahy
Utilizing CRISPR technologies to probe Staphylococcus epidermidis' role in the human skin microbiome, Destiny Porter
V225G Mutation Increases Stability of KPNA3 Thereby Contributing to an Age-Dependent Hyperactive Phenotype in C57BL/6J Mice, Ryan Guardado
Variant Caller Performance on Diverse Strains: Exploring the significance of the reference genome on caller performance, Aleisha Roberts
Variation in histone configurations correlates with gene expression across nine inbred strains of mice., Anna L. Tyler, Catrina Spruce, Romy Kursawe, Annat Haber, Robyn L Ball, Wendy A Pitman, Alexander D Fine, Narayanan Raghupathy, Michael Walker, Vivek M. Philip, Christopher L. Baker, J Matthew Mahoney, Gary Churchill, Jennifer J. Trowbridge, Michael L. Stitzel, Kenneth Paigen, Petko M. Petkov, and Gregory W. Carter
Variation in the CENP-A sequence association landscape across diverse inbred mouse strains., Uma P Arora, Beth A Sullivan, and Beth L Dumont
Visual Prediction of Mouse Mass using Machine Learning, Malachy Guzman
Vitamin D inhibits osteosarcoma by reprogramming nonsense-mediated RNA decay and SNAI2-mediated epithelial-to-mesenchymal transition., Enrico Capobianco, Vanessa McGaughey, Gerbenn Seraphin, John Heckel, Sandra Rieger, and Thomas S Lisse
Weighted learning for long-read DNA sequencing consensus methylation detection, Emma Wade
What Makes a Functional Gene Regulatory Network? A Circuit Motif Analysis., Lijia Huang, Benjamin Clauss, and Mingyang Lu
Whole genome analysis for 163 gRNAs in Cas9-edited mice reveals minimal off-target activity., Kevin A Peterson, Sam Khalouei, Nour Hanafi, Joshua A Wood, Denise G Lanza, Lauri G Lintott, Brandon J Willis, John R Seavitt, Robert E Braun, Mary E Dickinson, Jacqueline K White, K C Kent Lloyd, Jason D Heaney, Stephen A. Murray, Arun Ramani, and Lauryl M J Nutter
Whole-genome functional characterization of RE1 silencers using a modified massively parallel reporter assay., Kousuke Mouri, Hannah B Dewey, Rodrigo Castro, Daniel Berenzy, Susan Kales, and Ryan Tewhey
Whole Genome Resequencing Reveals Genetic Diversity and Selection Signatures of Ethiopian Indigenous Cattle Adapted to Local Environments, Endashaw Terefe, Gurja Belay, Abdulfatai Tijjani, Jianlin Han, and Oliver Hanotte
Why it is important to study human-monkey embryonic chimeras in a dish., Alejandro De Los Angeles, Alan Regenberg, Victoria Mascetti, Nissim Benvenisty, George Church, Hongkui Deng, Juan Carlos Izpisua Belmonte, Weizhi Ji, Julian Koplin, Yuin-Han Loh, Yuyu Niu, Duanqing Pei, Martin Pera, Nam Pho, Carlos Pinzon-Arteaga, Mitinori Saitou, Jose C R Silva, Tan Tao, Alan Trounson, Tushar Warrier, and Elias T Zambidis
Widespread perturbation of ETS factor binding sites in cancer., Sebastian Carrasco Pro, Heather Hook, David Bray, Daniel Berenzy, Devlin Moyer, Meimei Yin, Adam Thomas Labadorf, Ryan Tewhey, Trevor Siggers, and Juan Ignacio Fuxman Bass
Witch Nails (Krt90whnl): A spontaneous mouse mutation affecting nail growth and development., John P Sundberg, Hannah Galantino-Homer, Heather Fairfield, Patricia F. Ward-Bailey, Belinda S. Harris, Melissa L. Berry, C Herbert Pratt, Nicholas E Gott, Lesley S Bechtold, Pauline R Kaplan, Blythe P Durbin-Johnson, David M Rocke, and Robert H Rice